RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 GABPB1Q06547 395 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-213ENST00000598355 RCN1Q15293 331 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 CDONQ4KMG0 1287 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 BCL2L15Q5TBC7 163 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 LIPNQ5VXI9 398 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 TEX36Q5VZQ5 186 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 TMEM42Q69YG0 159 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 WDR82Q6UXN9 313 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 ZNF826PQ6ZT77 177 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 CATSPERDQ86XM0 798 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 PACRGLQ8N7B6 248 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 OR10H4Q8NGA5 316 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 APH1BQ8WW43 257 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 RORBQ92753 470 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 RNFT2Q96EX2 444 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 RTL8AQ9BWD3 113 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 C1orf123Q9NWV4 160 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 PCDHB10Q9UN67 800 aa13.48□□□□□ -0.25
TRIM28-213ENST00000598355 A6NLC8 198 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 ZNF850A8MQ14 1090 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 SRRM5B3KS81 715 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.47□□□□□ -0.25
TRIM28-213ENST00000598355 IFNA2P01563 188 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 GRPP07492 148 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 DBTP11182 482 aaKnown RBP13.47□□□□□ -0.25
TRIM28-213ENST00000598355 RPS2P15880 293 aaKnown RBP13.47□□□□□ -0.25
TRIM28-213ENST00000598355 ZNF12P17014 697 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 EGR1P18146 543 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 PEX2P28328 305 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 LCN2P80188 198 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 ESCO2Q56NI9 601 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 DCAF12L2Q5VW00 463 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 ZNF841Q6ZN19 808 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 ZNF771Q7L3S4 317 aaPredicted RBP13.47□□□□□ -0.25
TRIM28-213ENST00000598355 ZDHHC23Q8IYP9 409 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 DEFB108BQ8NET1 73 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 SEMA6DQ8NFY4 1073 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 NEIL1Q96FI4 390 aaPredicted RBP13.47□□□□□ -0.25
TRIM28-213ENST00000598355 MICU1Q9BPX6 476 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 TRIM36Q9NQ86 728 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 MRPS18AQ9NVS2 196 aaKnown RBP13.47□□□□□ -0.25
TRIM28-213ENST00000598355 CTSZQ9UBR2 303 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 AASSQ9UDR5 926 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 OPN4Q9UHM6 478 aa13.47□□□□□ -0.25
TRIM28-213ENST00000598355 OOEPA6NGQ2 149 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 SNTNA6NMZ2 147 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 TRAPPC2LH3BP13 241 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 MTRF1O75570 445 aaKnown RBP13.46□□□□□ -0.25
TRIM28-213ENST00000598355 IGHA1P01876 353 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 FAHP16930 419 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 CD80P33681 288 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 ATP6V1E1P36543 226 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 RIPPLY1Q0D2K3 151 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 FDX2Q6P4F2 183 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 LYPD2Q6UXB3 125 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 C1QL2Q7Z5L3 287 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 FAM90A1Q86YD7 464 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 YIPF7Q8N8F6 280 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 OR10Z1Q8NGY1 313 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 OR14K1Q8NGZ2 314 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 PIGCQ92535 297 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 LGALS12Q96DT0 336 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 FAM71F1Q96KD3 344 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-213ENST00000598355 ZNF649Q9BS31 505 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 SSBP3Q9BWW4 388 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-213ENST00000598355 MMP26Q9NRE1 261 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 ACOXLQ9NUZ1 547 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 KAAG1Q9UBP8 84 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 SLC22A13Q9Y226 551 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 PCDHGB1Q9Y5G3 927 aa13.46□□□□□ -0.25
TRIM28-213ENST00000598355 TRAV38-1A0A0B4J264 116 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 OR5B21A6NL26 309 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 WBP4O75554 376 aaKnown RBP13.45□□□□□ -0.26
TRIM28-213ENST00000598355 KIR3DL2P43630 455 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 PITPNBP48739 271 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 KCNJ8Q15842 424 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 TUSC1Q2TAM9 212 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 CEACAM21Q3KPI0 293 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 WDR38Q5JTN6 314 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 OGFRL1Q5TC84 451 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-213ENST00000598355 DOK3Q7L591 496 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 NLRC3Q7RTR2 1065 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 COMMD2Q86X83 199 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 EGFL6Q8IUX8 553 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 PRSS35Q8N3Z0 413 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 TEX29Q8N6K0 151 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 ACBD7Q8N6N7 88 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 C19orf18Q8NEA5 215 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 OR8B3Q8NGG8 313 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 LRRC29Q8WV35 223 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 OR8B2Q96RD0 313 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 METTL17Q9H7H0 456 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-213ENST00000598355 ENPP5Q9UJA9 477 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 INSIG2Q9Y5U4 225 aa13.45□□□□□ -0.26
TRIM28-213ENST00000598355 hCG_1807616A0A1W2PRN6 198 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 ANKRD65E5RJM6 399 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 PHF1O43189 567 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-213ENST00000598355 NDUFA2O43678 99 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 FCN3O75636 299 aa13.44□□□□□ -0.26
TRIM28-213ENST00000598355 RPP14O95059 124 aaKnown RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms