RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 SHISA3A0PJX4 238 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 AIREO43918 545 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 GATBO75879 557 aaKnown RBP8.06□□□□□ -1.12
TRIM28-208ENST00000597172 DHRS3O75911 302 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 SERPINA3P01011 423 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 UCHL1P09936 223 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 OCM2P0CE71 109 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 ZNF250P15622 560 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 TUBG1P23258 451 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 THBS4P35443 961 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 GLRXP35754 106 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 MPV17P39210 176 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 PTH2RP49190 550 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 FABP6P51161 128 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 TMBIM6P55061 237 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 PSG7Q13046 419 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 OR8B8Q15620 311 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 BEX5Q5H9J7 111 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 MBNL2Q5VZF2 373 aaKnown RBP8.06□□□□□ -1.12
TRIM28-208ENST00000597172 C22orf42Q6IC83 251 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 GDPGP1Q6ZNW5 385 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 PGAP1Q75T13 922 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 KRT74Q7RTS7 529 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 LRP11Q86VZ4 500 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 C1orf174Q8IYL3 243 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 NUP37Q8NFH4 326 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 KLF14Q8TD94 323 aaPredicted RBP8.06□□□□□ -1.12
TRIM28-208ENST00000597172 TMEM171Q8WVE6 324 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 AKAP1Q92667 903 aaKnown RBP eCLIP8.06□□□□□ -1.12
TRIM28-208ENST00000597172 NEUROG1Q92886 237 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 TMEM106AQ96A25 262 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 ADAT3Q96EY9 351 aaPredicted RBP8.06□□□□□ -1.12
TRIM28-208ENST00000597172 RADILQ96JH8 1075 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 TMEM204Q9BSN7 226 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 PPP1R3EQ9H7J1 279 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 NOX4Q9NPH5 578 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 TUBG2Q9NRH3 451 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 FZR1Q9UM11 496 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 SSR3Q9UNL2 185 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 DHDHQ9UQ10 334 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 SPEF1Q9Y4P9 236 aa8.06□□□□□ -1.12
TRIM28-208ENST00000597172 CD300LBA8K4G0 201 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 E7EQL1 145 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 LILRA1O75019 489 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 CD3EP07766 207 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 RAC2P15153 192 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 IGFBP3P17936 291 aaPredicted RBP8.05□□□□□ -1.12
TRIM28-208ENST00000597172 CFL1P23528 166 aaKnown RBP8.05□□□□□ -1.12
TRIM28-208ENST00000597172 MAP2K3P46734 347 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 VBP1P61758 197 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 NCS1P62166 190 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 RIPPLY1Q0D2K3 151 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 SNTB2Q13425 540 aaKnown RBP8.05□□□□□ -1.12
TRIM28-208ENST00000597172 ZNF718Q3SXZ3 478 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 OR2T2Q6IF00 324 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 ADAM5Q6NVV9 412 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 SLC22A25Q6T423 547 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 UNQ6126/PRO20091Q6UXV3 157 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 MRPL21Q7Z2W9 205 aaKnown RBP8.05□□□□□ -1.12
TRIM28-208ENST00000597172 COMMD2Q86X83 199 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 PARP16Q8N5Y8 322 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 CCDC54Q8NEL0 328 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 SEMA6DQ8NFY4 1073 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 KBTBD8Q8NFY9 601 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 OR56B2PQ8NGI1 322 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 OR13C3Q8NGS6 347 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 TSEN15Q8WW01 171 aaKnown RBP8.05□□□□□ -1.12
TRIM28-208ENST00000597172 PHYHIPQ92561 330 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 ISOC1Q96CN7 298 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 DGCR14Q96DF8 476 aaKnown RBP8.05□□□□□ -1.12
TRIM28-208ENST00000597172 PIK3IP1Q96FE7 263 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 OPA3Q9H6K4 179 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 EXOSC4Q9NPD3 245 aaKnown RBP8.05□□□□□ -1.12
TRIM28-208ENST00000597172 BATF3Q9NR55 127 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 NDUFA13Q9P0J0 144 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 PIGLQ9Y2B2 252 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 RHBDD3Q9Y3P4 386 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 ATP23Q9Y6H3 246 aa8.05□□□□□ -1.12
TRIM28-208ENST00000597172 TRAV8-7A0A075B6U6 113 aa8.04□□□□□ -1.12
TRIM28-208ENST00000597172 IGKV1-9A0A0C4DH69 117 aa8.04□□□□□ -1.12
TRIM28-208ENST00000597172 GGT3PA6NGU5 568 aa8.04□□□□□ -1.12
TRIM28-208ENST00000597172 DHRS7CA6NNS2 312 aa8.04□□□□□ -1.12
TRIM28-208ENST00000597172 H3BMQ9 156 aa8.04□□□□□ -1.12
TRIM28-208ENST00000597172 MTRF1O75570 445 aaKnown RBP8.04□□□□□ -1.12
TRIM28-208ENST00000597172 FAHP16930 419 aa8.04□□□□□ -1.12
TRIM28-208ENST00000597172 ZNF12P17014 697 aa8.04□□□□□ -1.12
TRIM28-208ENST00000597172 ADRA2CP18825 462 aa8.04□□□□□ -1.12
TRIM28-208ENST00000597172 SRMP19623 302 aa8.04□□□□□ -1.12
TRIM28-208ENST00000597172 KITLGP21583 273 aa8.04□□□□□ -1.12
TRIM28-208ENST00000597172 CALRP27797 417 aaKnown RBP8.04□□□□□ -1.12
TRIM28-208ENST00000597172 RBMXP38159 391 aaKnown RBP8.04□□□□□ -1.12
TRIM28-208ENST00000597172 DDOSTP39656 456 aa8.04□□□□□ -1.12
TRIM28-208ENST00000597172 SPCS2Q15005 226 aa8.04□□□□□ -1.12
TRIM28-208ENST00000597172 UBE2V2Q15819 145 aa8.04□□□□□ -1.12
TRIM28-208ENST00000597172 TIMM50Q3ZCQ8 353 aa8.04□□□□□ -1.12
TRIM28-208ENST00000597172 DMRTC1Q5HYR2 192 aa8.04□□□□□ -1.12
TRIM28-208ENST00000597172 CEP78Q5JTW2 689 aa8.04□□□□□ -1.12
TRIM28-208ENST00000597172 TMEM42Q69YG0 159 aa8.04□□□□□ -1.12
TRIM28-208ENST00000597172 RGS7BPQ6MZT1 257 aaPredicted RBP8.04□□□□□ -1.12
TRIM28-208ENST00000597172 ZNF529Q6P280 563 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms