RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 RSU1Q15404 277 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 ZNF529Q6P280 563 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 DRAM2Q6UX65 266 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 GLYATL2Q8WU03 294 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 OR10C1Q96KK4 312 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 TCEAL7Q9BRU2 100 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 FAM117AQ9C073 453 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 TEX13DA0A0J9YY54 714 aaPredicted RBP13.52□□□□□ -0.25
UPF1-204ENST00000596842 A6NIZ1 184 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 G3V3Y1 287 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 TSTD3H0UI37 97 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 ZNF41P51814 821 aaPredicted RBP13.52□□□□□ -0.25
UPF1-204ENST00000596842 PNLIPRP2P54317 469 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 RAP1BP61224 184 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 RAP1AP62834 184 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 RNF212Q495C1 297 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 PLAC9Q5JTB6 97 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 RPL7L1Q6DKI1 246 aaKnown RBP13.52□□□□□ -0.25
UPF1-204ENST00000596842 ZNF383Q8NA42 475 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 EDAQ92838 391 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 MRPL38Q96DV4 380 aaKnown RBP13.52□□□□□ -0.25
UPF1-204ENST00000596842 JSRP1Q96MG2 331 aaPredicted RBP13.52□□□□□ -0.25
UPF1-204ENST00000596842 SERINC1Q9NRX5 453 aa13.52□□□□□ -0.25
UPF1-204ENST00000596842 SLC33A1O00400 549 aaPredicted RBP13.51□□□□□ -0.25
UPF1-204ENST00000596842 IFI6P09912 130 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 SLC25A4P12235 298 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 C14orf28Q4W4Y0 310 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 LRP11Q86VZ4 500 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 EIF4E3Q8N5X7 224 aaKnown RBP13.51□□□□□ -0.25
UPF1-204ENST00000596842 OR14K1Q8NGZ2 314 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 CDC6Q99741 560 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 C5orf66Q9H5L9 145 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 CHST11Q9NPF2 352 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 TRBV11-1A0A0K0K1C0 115 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 RAD51DO75771 328 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 YIF1AO95070 293 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 GUSBP08236 651 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 FSTP19883 344 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 GUCA1AP43080 201 aaPredicted RBP13.51□□□□□ -0.25
UPF1-204ENST00000596842 GABRA4P48169 554 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 SNU13P55769 128 aaKnown RBP13.51□□□□□ -0.25
UPF1-204ENST00000596842 ZNF345Q14585 488 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 C1orf100Q5SVJ3 147 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 BRICD5Q6PL45 260 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 UEVLDQ8IX04 471 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 EDEM2Q9BV94 578 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 RGCCQ9H4X1 137 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 CRLF2Q9HC73 371 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 ZNF319Q9P2F9 582 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 FREM2Q5SZK8 3169 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 FASLGP48023 281 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 DCAF7P61962 342 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 MYBPHQ13203 477 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 CHRFAM7AQ494W8 412 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 TMEM128Q5BJH2 165 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.51□□□□□ -0.25
UPF1-204ENST00000596842 OR10D4PQ8NGN7 298 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 STT3BQ8TCJ2 826 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 PGAM5Q96HS1 289 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 OR51M1Q9H341 326 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 CA14Q9ULX7 337 aa13.51□□□□□ -0.25
UPF1-204ENST00000596842 A0A0A6YYD4 124 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 hCG_1809904A0A1W2PP81 198 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 A0A1W2PR64 198 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 A0A1W2PRV1 198 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 FAM221AA4D161 298 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 C5orf63A6NC05 138 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 LDLRAD4O15165 306 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 RAMP1O60894 148 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 NPIPB7O75200 414 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 ZNF616Q08AN1 781 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 ANKRD55Q3KP44 614 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 SEMA6DQ8NFY4 1073 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 OR8B12Q8NGG6 310 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 RNF133Q8WVZ7 376 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 DDIT4LQ96D03 193 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 CDCA3Q99618 268 aaPredicted RBP13.5□□□□□ -0.25
UPF1-204ENST00000596842 RNF126Q9BV68 326 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 LPAR5Q9H1C0 372 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 FAM206AQ9NX38 181 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 IGHV3-15A0A0B4J1V0 119 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 CCDC85CA6NKD9 419 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 ZNF726A6NNF4 738 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 NUDT21O43809 227 aaKnown RBP13.5□□□□□ -0.25
UPF1-204ENST00000596842 SMIM6P0DI80 62 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 FXYD4P59646 89 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 TMEM176BQ3YBM2 270 aaPredicted RBP13.5□□□□□ -0.25
UPF1-204ENST00000596842 ZDHHC22Q8N966 263 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 OR10S1Q8NGN2 331 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 EIF5A2Q9GZV4 153 aaKnown RBP13.5□□□□□ -0.25
UPF1-204ENST00000596842 IGFBP4P22692 258 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 LBX1P52954 281 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 KIAA0141Q14154 515 aaPredicted RBP13.5□□□□□ -0.25
UPF1-204ENST00000596842 ZNF674Q2M3X9 581 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 SP6Q3SY56 376 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 PGAP1Q75T13 922 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 C1QL2Q7Z5L3 287 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 CCDC74BQ96LY2 380 aa13.5□□□□□ -0.25
UPF1-204ENST00000596842 KCNK17Q96T54 332 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms