RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 hCG_38984A0A1B0GV85 526 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 MDFIC2A0A1B0GVS7 189 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 A8MXK9 166 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 MLNRO43193 412 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 HLA-DPB1P04440 258 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 KRT8P05787 483 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 DBTP11182 482 aaKnown RBP10.43□□□□□ -0.74
UPF1-203ENST00000594504 ADARB1P78563 741 aaKnown RBP10.43□□□□□ -0.74
UPF1-203ENST00000594504 FAM3AP98173 230 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 HOXA4Q00056 320 aaPredicted RBP10.43□□□□□ -0.74
UPF1-203ENST00000594504 IL5RAQ01344 420 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 PAX2Q02962 417 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 ZNF91Q05481 1191 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 IL18R1Q13478 541 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 GFOD2Q3B7J2 385 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 ZNF691Q5VV52 312 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 LYPD2Q6UXB3 125 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 SSX6Q7RTT6 188 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 MOGAT3Q86VF5 341 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 OR8B12Q8NGG6 310 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 OR56B2PQ8NGI1 322 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 TMEM246Q9BRR3 403 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 ADI1Q9BV57 179 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 MOB1AQ9H8S9 216 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 MRPL15Q9P015 296 aaKnown RBP10.43□□□□□ -0.74
UPF1-203ENST00000594504 ZNF319Q9P2F9 582 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 OR5V1Q9UGF6 321 aa10.43□□□□□ -0.74
UPF1-203ENST00000594504 MRM2Q9UI43 246 aaKnown RBP10.43□□□□□ -0.74
UPF1-203ENST00000594504 A0A0U1RQV5 110 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 METTL15A6NJ78 407 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 LOC110117498-PIK3R3F6TDL0 507 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 H0YAE9 185 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 J3QRE1 110 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 SRSF10O75494 262 aaKnown RBP10.42□□□□□ -0.74
UPF1-203ENST00000594504 SULT1C4O75897 302 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 CLIC3O95833 236 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 RPS2P15880 293 aaKnown RBP10.42□□□□□ -0.74
UPF1-203ENST00000594504 CAPGP40121 348 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 SRP9P49458 86 aaKnown RBP10.42□□□□□ -0.74
UPF1-203ENST00000594504 GSK3AP49840 483 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 GNB2P62879 340 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 SLC9A3R2Q15599 337 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 OR8B8Q15620 311 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 SNCBQ16143 134 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 ZNF684Q5T5D7 378 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 SHISA2Q6UWI4 295 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 PLEKHG7Q6ZR37 379 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 KLBQ86Z14 1044 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 YIPF7Q8N8F6 280 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 APH1BQ8WW43 257 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 ITFG2Q969R8 447 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 LGALS12Q96DT0 336 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 SSBP3Q9BWW4 388 aaPredicted RBP10.42□□□□□ -0.74
UPF1-203ENST00000594504 PBOV1Q9GZY1 135 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 UNKLQ9H9P5 680 aaKnown RBP10.42□□□□□ -0.74
UPF1-203ENST00000594504 NUFIP1Q9UHK0 495 aaKnown RBP10.42□□□□□ -0.74
UPF1-203ENST00000594504 EXOGQ9Y2C4 368 aaKnown RBP10.42□□□□□ -0.74
UPF1-203ENST00000594504 RPL36Q9Y3U8 105 aaKnown RBP10.42□□□□□ -0.74
UPF1-203ENST00000594504 R4GMQ9 66 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 HSPE1-MOB4S4R3N1 261 aa10.42□□□□□ -0.74
UPF1-203ENST00000594504 DAPL1A0PJW8 107 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 ANKRD30BLA7E2S9 258 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 H0YJX3 145 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 IFNL4K9M1U5 179 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 MAGEB4O15481 346 aaPredicted RBP10.41□□□□□ -0.74
UPF1-203ENST00000594504 GMDSO60547 372 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 WBP4O75554 376 aaKnown RBP10.41□□□□□ -0.74
UPF1-203ENST00000594504 FADS2O95864 444 aaKnown RBP10.41□□□□□ -0.74
UPF1-203ENST00000594504 CA6P23280 308 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 OMGP23515 440 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 ZNF85Q03923 595 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 MFGE8Q08431 387 aaPredicted RBP10.41□□□□□ -0.74
UPF1-203ENST00000594504 RAB40BQ12829 278 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 OR8G1Q15617 311 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 KLHL22Q53GT1 634 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 PRR31Q5SQ13 230 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 FAM220AQ7Z4H9 259 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 KCTD20Q7Z5Y7 419 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 MUC20Q8N307 709 aaPredicted RBP10.41□□□□□ -0.74
UPF1-203ENST00000594504 FTMTQ8N4E7 242 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 ACBD7Q8N6N7 88 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 CELF2-AS1Q8N7Q2 184 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 CSNK2A3Q8NEV1 391 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 NRG4Q8WWG1 115 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 RAB40AQ8WXH6 277 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 MRPL48Q96GC5 212 aaKnown RBP10.41□□□□□ -0.74
UPF1-203ENST00000594504 LYZL4Q96KX0 146 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 MYCBPQ99417 103 aaPredicted RBP10.41□□□□□ -0.74
UPF1-203ENST00000594504 ADAT1Q9BUB4 502 aaKnown RBP10.41□□□□□ -0.74
UPF1-203ENST00000594504 VCX3BQ9H321 246 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 AMBNQ9NP70 447 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 TNFRSF19Q9NS68 423 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 MRPS18AQ9NVS2 196 aaKnown RBP10.41□□□□□ -0.74
UPF1-203ENST00000594504 LRCH1Q9Y2L9 728 aa10.41□□□□□ -0.74
UPF1-203ENST00000594504 TRAV40A0A0B4J280 105 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 IGHV2-70DA0A0C4DH43 119 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.4□□□□□ -0.74
UPF1-203ENST00000594504 RNASE1P07998 156 aaKnown RBP10.4□□□□□ -0.74
UPF1-203ENST00000594504 ATP6V1B1P15313 513 aa10.4□□□□□ -0.74
UPF1-203ENST00000594504 MDKP21741 143 aaPredicted RBP10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms