RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 PIGLQ9Y2B2 252 aa10□□□□□ -0.81
LIG3-213ENST00000590630 MYRFQ9Y2G1 1151 aa10□□□□□ -0.81
LIG3-213ENST00000590630 ARHGAP32A7KAX9 2087 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 PPIAL4EA0A075B759 164 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 A0A1B0GTI1 187 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 TMEM210A6NLX4 147 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 PPIAL4DF5H284 164 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 H0YJX3 145 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 CRLF1O75462 422 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 UBCP0CG48 685 aaKnown RBP9.99□□□□□ -0.81
LIG3-213ENST00000590630 PPIAL4FP0DN26 164 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 FAHP16930 419 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 HOXB4P17483 251 aaPredicted RBP9.99□□□□□ -0.81
LIG3-213ENST00000590630 RBMXP38159 391 aaKnown RBP9.99□□□□□ -0.81
LIG3-213ENST00000590630 OR12D2P58182 307 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 ZNF154Q13106 437 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 SMN1Q16637 294 aaKnown RBP9.99□□□□□ -0.81
LIG3-213ENST00000590630 CEACAM21Q3KPI0 293 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 FAM76BQ5HYJ3 339 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 WDR38Q5JTN6 314 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 FDX2Q6P4F2 183 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 Q6ZSR3 168 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 GLCCI1Q86VQ1 547 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 C8orf59Q8N0T1 100 aaPredicted RBP9.99□□□□□ -0.81
LIG3-213ENST00000590630 SYS1Q8N2H4 156 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 CCDC54Q8NEL0 328 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 OR1M1Q8NGA1 313 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 OR52I1Q8NGK6 324 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 CNIH3Q8TBE1 160 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 PIGCQ92535 297 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 TMEM186Q96B77 213 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 HIST1H2AAQ96QV6 131 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 ALG8Q9BVK2 526 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 JAM3Q9BX67 310 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 TLNRD1Q9H1K6 362 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 VCX3BQ9H321 246 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 PPP1R3EQ9H7J1 279 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 PATZ1Q9HBE1 687 aaKnown RBP9.99□□□□□ -0.81
LIG3-213ENST00000590630 TRIM36Q9NQ86 728 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 C1orf123Q9NWV4 160 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 ERVK13-1Q9NX77 482 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 CDC42EP3Q9UKI2 254 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 SLC22A13Q9Y226 551 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 PPIAL4AQ9Y536 164 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 V9GYS6 101 aa9.99□□□□□ -0.81
LIG3-213ENST00000590630 ANK3Q12955 4377 aaKnown RBP9.98□□□□□ -0.81
LIG3-213ENST00000590630 TRAV20A0A0B4J274 112 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 A0A1B0GVI7 797 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 hCG_1807616A0A1W2PRN6 198 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 OR5B21A6NL26 309 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 J3QLW9 94 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 P2RY10O00398 339 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 SYT7O43581 403 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 GNAO1P09471 354 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 ZNF12P17014 697 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 ZNF19P17023 458 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 DCKP27707 260 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 CFHR2P36980 270 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 MRPL28Q13084 256 aaKnown RBP9.98□□□□□ -0.81
LIG3-213ENST00000590630 KCNJ8Q15842 424 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 ZNF404Q494X3 552 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 WDR86Q86TI4 376 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 LHFPL3Q86UP9 236 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 PRSS35Q8N3Z0 413 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 OR14K1Q8NGZ2 314 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 OR2G2Q8NGZ5 317 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 HAVCR2Q8TDQ0 301 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 NRG4Q8WWG1 115 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 HPSE2Q8WWQ2 592 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 TFAP2CQ92754 450 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 RNF166Q96A37 237 aaPredicted RBP9.98□□□□□ -0.81
LIG3-213ENST00000590630 PELI1Q96FA3 418 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 RNF170Q96K19 258 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 C4orf36Q96KX1 117 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 LPAR2Q9HBW0 351 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 TMEM165Q9HC07 324 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 FGF20Q9NP95 211 aaPredicted RBP9.98□□□□□ -0.81
LIG3-213ENST00000590630 LPAR3Q9UBY5 353 aa9.98□□□□□ -0.81
LIG3-213ENST00000590630 CEACAM18A8MTB9 384 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 F5H0A9 414 aaPredicted RBP9.97□□□□□ -0.81
LIG3-213ENST00000590630 PLPP2O43688 288 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 FOXH1O75593 365 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 ZNF205O95201 554 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 NRASP01111 189 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 LHBP01229 141 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 ISG15P05161 165 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 HTR1AP08908 422 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 HNF1AP20823 631 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 THBS2P35442 1172 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 PSMB10P40306 273 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 KIR3DL2P43630 455 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 GPM6AP51674 278 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 CCR9P51686 369 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 GNG3P63215 75 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 CSNK2BP67870 215 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 ODF4Q2M2E3 257 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 CHRFAM7AQ494W8 412 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 CEP78Q5JTW2 689 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 CLVS2Q5SYC1 327 aa9.97□□□□□ -0.81
LIG3-213ENST00000590630 TMEM244Q5VVB8 128 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms