RNA–Protein interactions for RNA: ENST00000583328.5

TOP3A-215, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-215ENST00000583328 PTBP3O95758 552 aaKnown RBP10.07□□□□□ -0.8
TOP3A-215ENST00000583328 MPIG6BO95866 241 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 ACSM4P0C7M7 580 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 VSIG10L2P0DP72 767 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 NOS3P29474 1203 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 GGT2P36268 569 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 HIST1H3AP68431 136 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 EMX1Q04741 257 aaPredicted RBP10.07□□□□□ -0.8
TOP3A-215ENST00000583328 KLRD1Q13241 179 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 HIST2H3PS2Q5TEC6 136 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 HIST2H3AQ71DI3 136 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 NAA40Q86UY6 237 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 FGFRL1Q8N441 504 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 LNX2Q8N448 690 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 GCSAMQ8N6F7 178 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 PPP1R35Q8TAP8 253 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 PHF21AQ96BD5 680 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 CCL13Q99616 98 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 PITX2Q99697 317 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 CIB1Q99828 191 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 ADAT1Q9BUB4 502 aaKnown RBP10.07□□□□□ -0.8
TOP3A-215ENST00000583328 C9orf16Q9BUW7 83 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 VSX1Q9NZR4 365 aaPredicted RBP10.07□□□□□ -0.8
TOP3A-215ENST00000583328 LHFPL6Q9Y693 200 aa10.07□□□□□ -0.8
TOP3A-215ENST00000583328 GGT3PA6NGU5 568 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 H3BUX3 64 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 EI24O14681 340 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 HIST1H1CP16403 213 aaKnown RBP10.06□□□□□ -0.8
TOP3A-215ENST00000583328 POU1F1P28069 291 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 GRK5P34947 590 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 SAA4P35542 130 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 DLX1P56177 255 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 ESRRGP62508 458 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 MZT1Q08AG7 82 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 LY6EQ16553 131 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 KRTAP27-1Q3LI81 207 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 FOXB2Q5VYV0 432 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 TEX36Q5VZQ5 186 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 C11orf87Q6NUJ2 197 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 DNM1P34Q6PK57 102 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 PTCHD4Q6ZW05 846 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 PNKDQ8N490 385 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 OR4Q3Q8NH05 313 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 EME1Q96AY2 570 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 R3HDM4Q96D70 268 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 DMRTB1Q96MA1 342 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 SSX3Q99909 188 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 FAM234AQ9H0X4 552 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 MMP28Q9H239 520 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 DCLRE1BQ9H816 532 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 SLC25A19Q9HC21 320 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 USE1Q9NZ43 259 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 MAB21L2Q9Y586 359 aa10.06□□□□□ -0.8
TOP3A-215ENST00000583328 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.05□□□□□ -0.8
TOP3A-215ENST00000583328 A0A1B0GW55 424 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 NDUFB3O43676 98 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 MITFO75030 526 aaPredicted RBP10.05□□□□□ -0.8
TOP3A-215ENST00000583328 RENP00797 406 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 LHBP01229 141 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 IFNGP01579 166 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 ALPLP05186 524 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 DUX4L2P0CJ85 424 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 DUX4L3P0CJ86 424 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 DUX4L4P0CJ87 422 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 DUX4L5P0CJ88 424 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 DUX4L6P0CJ89 424 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 DUX4L7P0CJ90 424 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 CRABP1P29762 137 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 CDKN2AP42771 156 aaKnown RBP10.05□□□□□ -0.8
TOP3A-215ENST00000583328 ALDH3A2P51648 485 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 UBE2E1P51965 193 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 CRISP1P54107 249 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 TPTEP56180 551 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.05□□□□□ -0.8
TOP3A-215ENST00000583328 ECH1Q13011 328 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 GINS1Q14691 196 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 MICBQ29980 383 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 SLC35F1Q5T1Q4 408 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 DUX4L9Q6RFH8 374 aaPredicted RBP10.05□□□□□ -0.8
TOP3A-215ENST00000583328 SLC36A1Q7Z2H8 476 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 LINC00346Q8IVM7 164 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 CBR4Q8N4T8 237 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 Q8N7P7 452 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 DTX3Q8N9I9 347 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 BEND2Q8NDZ0 799 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 OR2AJ1Q8NGZ0 328 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 OR4K13Q8NH42 304 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 TSSK2Q96PF2 358 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 ATF6BQ99941 703 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 TEX12Q9BXU0 123 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 RAB18Q9NP72 206 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 DUX4Q9UBX2 424 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 ORC6Q9Y5N6 252 aa10.05□□□□□ -0.8
TOP3A-215ENST00000583328 RIIAD1A6NNX1 92 aa10.04□□□□□ -0.8
TOP3A-215ENST00000583328 FBXO24O75426 580 aa10.04□□□□□ -0.8
TOP3A-215ENST00000583328 HMGN1P05114 100 aa10.04□□□□□ -0.8
TOP3A-215ENST00000583328 CDK5Q00535 292 aa10.04□□□□□ -0.8
TOP3A-215ENST00000583328 ZNF92Q03936 586 aa10.04□□□□□ -0.8
TOP3A-215ENST00000583328 ACSM1Q08AH1 577 aa10.04□□□□□ -0.8
TOP3A-215ENST00000583328 IKZF1Q13422 519 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms