RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 TBL1XR1Q9BZK7 514 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 C20orf27Q9GZN8 174 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 HOXD1Q9GZZ0 328 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 NTN4Q9HB63 628 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 EXD2Q9NVH0 621 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 GIN1Q9NXP7 522 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 MRPS18CQ9Y3D5 142 aaKnown RBP5.19□□□□□ -1.58
VPS53-212ENST00000572259 CENPEQ02224 2701 aa5.19□□□□□ -1.58
VPS53-212ENST00000572259 CREBBPQ92793 2442 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 SPENQ96T58 3664 aaKnown RBP5.18□□□□□ -1.58
VPS53-212ENST00000572259 A0A0G2JK05 382 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 A0A0G2JMM0 328 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 A0A1W2PPB8 328 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 A0A1W2PRS3 328 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 PINLYPA6NC86 204 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 KIR3DP1A8MWS1 328 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 E9PQ18 207 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 UBDO15205 165 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 SIVA1O15304 175 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 CHST1O43916 411 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 ZG16O60844 167 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 NDUFS7O75251 213 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 NDUFB8O95169 186 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 PSMG1O95456 288 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 CPSF4O95639 269 aaKnown RBP5.18□□□□□ -1.58
VPS53-212ENST00000572259 C6orf47O95873 294 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 ACTL6AO96019 429 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 HMGN2P05204 90 aaKnown RBP5.18□□□□□ -1.58
VPS53-212ENST00000572259 IL6P05231 212 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 HPNP05981 417 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 ZNF43P17038 809 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 KITLGP21583 273 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 GLRA1P23415 457 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 CFHR2P36980 270 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 MRPL19P49406 292 aaKnown RBP5.18□□□□□ -1.58
VPS53-212ENST00000572259 CDK9P50750 372 aaKnown RBP5.18□□□□□ -1.58
VPS53-212ENST00000572259 DSCR4P56555 118 aaPredicted RBP5.18□□□□□ -1.58
VPS53-212ENST00000572259 CHRNB3Q05901 458 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 SRSF1Q07955 248 aaKnown RBP eCLIP5.18□□□□□ -1.58
VPS53-212ENST00000572259 KLF9Q13886 244 aaPredicted RBP5.18□□□□□ -1.58
VPS53-212ENST00000572259 DNAL1Q4LDG9 190 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 C5orf47Q569G3 176 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 TTMPQ5BVD1 217 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 CLVS2Q5SYC1 327 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 DHRS11Q6UWP2 260 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 CHMP1BQ7LBR1 199 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 IFNEQ86WN2 208 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 RIMKLAQ8IXN7 391 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 CENPSQ8N2Z9 138 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 MARVELD2Q8N4S9 558 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 KRTCAP2Q8N6L1 136 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 KLHDC1Q8N7A1 406 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 DMBX1Q8NFW5 382 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 OR10A7Q8NGE5 316 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 CA5BP1Q8WTZ4 195 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 ABTB1Q969K4 478 aaPredicted RBP5.18□□□□□ -1.58
VPS53-212ENST00000572259 RMND5BQ96G75 393 aaPredicted RBP5.18□□□□□ -1.58
VPS53-212ENST00000572259 MAGEB18Q96M61 343 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 NODALQ96S42 347 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 MBOAT4Q96T53 435 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 C7orf50Q9BRJ6 194 aaKnown RBP5.18□□□□□ -1.58
VPS53-212ENST00000572259 PIGUQ9H490 435 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 PROK2Q9HC23 129 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 NANSQ9NR45 359 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 SLC17A5Q9NRA2 495 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 UBQLN4Q9NRR5 601 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 GHRLQ9UBU3 117 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 MARCOQ9UEW3 520 aaPredicted RBP5.18□□□□□ -1.58
VPS53-212ENST00000572259 DKKL1Q9UK85 242 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 STUB1Q9UNE7 303 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 SLC6A5Q9Y345 797 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 WIF1Q9Y5W5 379 aa5.18□□□□□ -1.58
VPS53-212ENST00000572259 SETXQ7Z333 2677 aaKnown RBP5.17□□□□□ -1.58
VPS53-212ENST00000572259 TMEM272A0A1B0GTI8 110 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 A0A1B0GW15 77 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 A0A1W2PRD5 423 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 TMEM213A2RRL7 107 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 GAGE12JA6NER3 117 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 DNAJC9-AS1A6NH13 148 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 M0R3G1 203 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 RFXANKO14593 260 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 GPR171O14626 319 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 IMPA2O14732 288 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 FADS1O60427 444 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 GMDSO60547 372 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 RAMP3O60896 148 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 DIRAS1O95057 198 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 KCNK2O95069 426 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 NXPH2O95156 264 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 UTS2O95399 124 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 CLDN14O95500 239 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 KRT75O95678 551 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 IFNA2P01563 188 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 ALDOBP05062 364 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 NGFRP08138 427 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 EFNA1P20827 205 aaPredicted RBP5.17□□□□□ -1.58
VPS53-212ENST00000572259 CHRNB4P30926 498 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 PCYT1AP49585 367 aa5.17□□□□□ -1.58
VPS53-212ENST00000572259 POLR2GP62487 172 aaKnown RBP eCLIP5.17□□□□□ -1.58
VPS53-212ENST00000572259 HBA1P69905 142 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms