RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 MKI67P46013 3256 aaKnown RBP9.5□□□□□ -0.89
CCDC40-207ENST00000572253 NFYBP25208 207 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 P2RY4P51582 365 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 DVL1P1P54792 670 aaPredicted RBP9.5□□□□□ -0.89
CCDC40-207ENST00000572253 SUPT4H1P63272 117 aaKnown RBP9.5□□□□□ -0.89
CCDC40-207ENST00000572253 ECH1Q13011 328 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 PPA1Q15181 289 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 METTL7AQ9H8H3 244 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 C5orf42Q9H799 3197 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 PCNX3Q9H6A9 2034 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 HEXBP07686 556 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 ZNF43P17038 809 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 CPT2P23786 658 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 CDAP32320 146 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 LPAR6P43657 344 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 Q6ZRG5 221 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 ZFP82Q8N141 532 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 RHBDD1Q8TEB9 315 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 KIRREL1Q96J84 757 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 USB1Q9BQ65 265 aaKnown RBP9.5□□□□□ -0.89
CCDC40-207ENST00000572253 MRPL13Q9BYD1 178 aaKnown RBP9.5□□□□□ -0.89
CCDC40-207ENST00000572253 CNTNAP3Q9BZ76 1288 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 TPSD1Q9BZJ3 242 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 COA4Q9NYJ1 87 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 THADAQ6YHU6 1953 aa9.5□□□□□ -0.89
CCDC40-207ENST00000572253 CPAMD8Q8IZJ3 1885 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 BORCS7-ASMTA0A0B4J1R7 106 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 A0A1W2PP11 408 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 TSPAN15O95858 294 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 GAPDHP04406 335 aaKnown RBP9.49□□□□□ -0.89
CCDC40-207ENST00000572253 FOLR1P15328 257 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 FCGR2CP31995 323 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 KCNJ3P48549 501 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 EFNA3P52797 238 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 EIF3IQ13347 325 aaKnown RBP9.49□□□□□ -0.89
CCDC40-207ENST00000572253 C17orf82Q86X59 251 aaPredicted RBP9.49□□□□□ -0.89
CCDC40-207ENST00000572253 WDFY1Q8IWB7 410 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 D2HGDHQ8N465 521 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 ADPRHL1Q8NDY3 354 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 OR5L2Q8NGL0 311 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 OR5D18Q8NGL1 313 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 C1orf147Q96MC9 270 aaPredicted RBP9.49□□□□□ -0.89
CCDC40-207ENST00000572253 ESRP2Q9H6T0 727 aaKnown RBP9.49□□□□□ -0.89
CCDC40-207ENST00000572253 FANCFQ9NPI8 374 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 FAM212BQ9NTI7 297 aaPredicted RBP9.49□□□□□ -0.89
CCDC40-207ENST00000572253 SHISA8B8ZZ34 492 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 HKR1P10072 659 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 SERPINA2P20848 420 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 PTGFRP43088 359 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 DLX2Q07687 328 aaPredicted RBP9.49□□□□□ -0.89
CCDC40-207ENST00000572253 SHHQ15465 462 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 Q6ZS52 159 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 C15orf54Q8N8G6 183 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 BHLHE23Q8NDY6 225 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 NPRL2Q8WTW4 380 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 OR5B2Q96R09 309 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.49□□□□□ -0.89
CCDC40-207ENST00000572253 FGF21Q9NSA1 209 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 LSM5Q9Y4Y9 91 aaKnown RBP9.49□□□□□ -0.89
CCDC40-207ENST00000572253 H3BMH7 237 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 RER1O15258 196 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 PGA4P0DJD7 388 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 PGA3P0DJD8 388 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 CCL1P22362 96 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 THBS4P35443 961 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 RBM39Q14498 530 aaKnown RBP9.49□□□□□ -0.89
CCDC40-207ENST00000572253 KISS1Q15726 138 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 OGFOD3Q6PK18 319 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 MAFIPQ8WZ33 124 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 PRRX2Q99811 253 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 PECRQ9BY49 303 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 PLEKHA2Q9HB19 425 aa9.49□□□□□ -0.89
CCDC40-207ENST00000572253 IGHV1OR21-1A0A087WYE8 117 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 SCGB1D2O95969 90 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 QDPRP09417 244 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 SMAD2Q15796 467 aaKnown RBP9.48□□□□□ -0.89
CCDC40-207ENST00000572253 AADACL3Q5VUY0 350 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 TMPRSS9Q7Z410 1059 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 RNF144BQ7Z419 303 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 FAM89BQ8N5H3 189 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 OR9K2Q8NGE7 335 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 OR6X1Q8NH79 312 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 STT3BQ8TCJ2 826 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 C14orf79Q96F83 325 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 OXGR1Q96P68 337 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 RGCCQ9H4X1 137 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 ZNF160Q9HCG1 818 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 RPS10P5Q9NQ39 176 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 B3GAT1Q9P2W7 334 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 FBXL17Q9UF56 701 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 EDARQ9UNE0 448 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 KCNIP3Q9Y2W7 256 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 PCDHGA1Q9Y5H4 931 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 TRBV11-1A0A0K0K1C0 115 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 STMND1H3BQB6 276 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 PRF1P14222 555 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 PTAFRP25105 342 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 SLC25A47Q6Q0C1 308 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 BTNL8Q6UX41 500 aa9.48□□□□□ -0.89
CCDC40-207ENST00000572253 COMMD1Q8N668 190 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms