RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 NAA40Q86UY6 237 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 OR1F12Q8NHA8 337 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 MMP26Q9NRE1 261 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 ICAM5Q9UMF0 924 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 POLR2AP24928 1970 aaKnown RBP13.72□□□□□ -0.21
CIITA-204ENST00000570546 RAB27BO00194 218 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 CDC14BO60729 498 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 WDR1O75083 606 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 IAPPP10997 89 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 OR3A4PP47883 348 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 SPEM1Q8N4L4 309 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 OR2V1Q8NHB1 315 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 DEFB127Q9H1M4 99 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 PATZ1Q9HBE1 687 aaKnown RBP13.72□□□□□ -0.21
CIITA-204ENST00000570546 SH3BGRL2Q9UJC5 107 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 PCDHB10Q9UN67 800 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 PRSS44E7EML9 344 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 SCAF4O95104 1147 aaKnown RBP13.72□□□□□ -0.21
CIITA-204ENST00000570546 GLRA1P23415 457 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 PTAFRP25105 342 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 CCL11P51671 97 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 OR2B8PP59922 312 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 ETFDHQ16134 617 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 LRRTM1Q86UE6 522 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 THNSL2Q86YJ6 484 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 ZNF808Q8N4W9 903 aaPredicted RBP13.72□□□□□ -0.21
CIITA-204ENST00000570546 HGDQ93099 445 aa13.72□□□□□ -0.21
CIITA-204ENST00000570546 ALKBH3Q96Q83 286 aaPredicted RBP13.72□□□□□ -0.21
CIITA-204ENST00000570546 HRKO00198 91 aa13.71□□□□□ -0.21
CIITA-204ENST00000570546 PLA1AQ53H76 456 aa13.71□□□□□ -0.21
CIITA-204ENST00000570546 MCHR2Q969V1 340 aa13.71□□□□□ -0.21
CIITA-204ENST00000570546 AKR1E2Q96JD6 320 aa13.71□□□□□ -0.21
CIITA-204ENST00000570546 CYB5R1Q9UHQ9 305 aa13.71□□□□□ -0.21
CIITA-204ENST00000570546 TRIP12Q14669 1992 aaPredicted RBP13.71□□□□□ -0.21
CIITA-204ENST00000570546 ADAM10O14672 748 aa13.71□□□□□ -0.21
CIITA-204ENST00000570546 GREM1O60565 184 aa13.71□□□□□ -0.21
CIITA-204ENST00000570546 PTGFRP43088 359 aa13.71□□□□□ -0.21
CIITA-204ENST00000570546 SPSB1Q96BD6 273 aa13.71□□□□□ -0.21
CIITA-204ENST00000570546 PRRX2Q99811 253 aa13.71□□□□□ -0.21
CIITA-204ENST00000570546 LIN7CQ9NUP9 197 aaKnown RBP13.71□□□□□ -0.21
CIITA-204ENST00000570546 MED9Q9NWA0 146 aa13.71□□□□□ -0.21
CIITA-204ENST00000570546 YBX2Q9Y2T7 364 aaKnown RBP13.71□□□□□ -0.21
CIITA-204ENST00000570546 PARP14Q460N5 1801 aa13.71□□□□□ -0.21
CIITA-204ENST00000570546 IGHV1OR21-1A0A087WYE8 117 aa13.71□□□□□ -0.21
CIITA-204ENST00000570546 MPC2O95563 127 aa13.71□□□□□ -0.21
CIITA-204ENST00000570546 CEACAM16Q2WEN9 425 aa13.71□□□□□ -0.21
CIITA-204ENST00000570546 ABI3BPQ7Z7G0 1075 aa13.71□□□□□ -0.21
CIITA-204ENST00000570546 RXFP4Q8TDU9 374 aa13.71□□□□□ -0.21
CIITA-204ENST00000570546 RPH3ALQ9UNE2 315 aa13.71□□□□□ -0.21
CIITA-204ENST00000570546 IGHV3-64DA0A0J9YX35 117 aa13.71□□□□□ -0.22
CIITA-204ENST00000570546 LIMS1P48059 325 aa13.71□□□□□ -0.22
CIITA-204ENST00000570546 RAB35Q15286 201 aa13.71□□□□□ -0.22
CIITA-204ENST00000570546 OR2B11Q5JQS5 317 aa13.71□□□□□ -0.22
CIITA-204ENST00000570546 ASB10Q8WXI3 467 aa13.71□□□□□ -0.22
CIITA-204ENST00000570546 TECTBQ96PL2 329 aa13.71□□□□□ -0.22
CIITA-204ENST00000570546 CENPVL1A0A0U1RR11 272 aa13.71□□□□□ -0.22
CIITA-204ENST00000570546 CST4P01036 141 aa13.71□□□□□ -0.22
CIITA-204ENST00000570546 HPXP02790 462 aa13.71□□□□□ -0.22
CIITA-204ENST00000570546 LAIR2Q6ISS4 152 aa13.71□□□□□ -0.22
CIITA-204ENST00000570546 GCNT2Q8N0V5 402 aa13.71□□□□□ -0.22
CIITA-204ENST00000570546 GVQW1Q8N7I0 195 aa13.71□□□□□ -0.22
CIITA-204ENST00000570546 CADM4Q8NFZ8 388 aa13.71□□□□□ -0.22
CIITA-204ENST00000570546 FOXB1Q99853 325 aa13.71□□□□□ -0.22
CIITA-204ENST00000570546 C1QTNF6Q9BXI9 259 aa13.71□□□□□ -0.22
CIITA-204ENST00000570546 ST6GALNAC2Q9UJ37 374 aa13.71□□□□□ -0.22
CIITA-204ENST00000570546 ZNF732B4DXR9 585 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 DHRS3O75911 302 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 RAB4AP20338 218 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 CLN3Q13286 438 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 PDZD11Q5EBL8 140 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 ZNF787Q6DD87 383 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 C15orf54Q8N8G6 183 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 CXorf58Q96LI9 332 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 PCED1AQ9H1Q7 454 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 PSENENQ9NZ42 101 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 SIRT4Q9Y6E7 314 aaPredicted RBP13.7□□□□□ -0.22
CIITA-204ENST00000570546 BTBD17A6NE02 478 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 TERTO14746 1132 aaKnown RBP13.7□□□□□ -0.22
CIITA-204ENST00000570546 SP6Q3SY56 376 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 C16orf47Q6ZP98 133 aaPredicted RBP13.7□□□□□ -0.22
CIITA-204ENST00000570546 PPP1R3EQ9H7J1 279 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 CRLF2Q9HC73 371 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 DUS4LO95620 317 aaKnown RBP13.7□□□□□ -0.22
CIITA-204ENST00000570546 PPIAP62937 165 aaKnown RBP13.7□□□□□ -0.22
CIITA-204ENST00000570546 FBXL14Q8N1E6 418 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 RIMS4Q9H426 269 aaPredicted RBP13.7□□□□□ -0.22
CIITA-204ENST00000570546 RNF150Q9ULK6 438 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 LOXL2Q9Y4K0 774 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 ZNFX1Q9P2E3 1918 aaKnown RBP13.7□□□□□ -0.22
CIITA-204ENST00000570546 GON4LQ3T8J9 2241 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 LGALSLQ3ZCW2 172 aaPredicted RBP13.7□□□□□ -0.22
CIITA-204ENST00000570546 PRAMEF5Q5TYX0 476 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 C1QL3Q5VWW1 255 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 PRAMEF6Q5VXH4 476 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 LSRQ86X29 649 aaPredicted RBP13.7□□□□□ -0.22
CIITA-204ENST00000570546 PHYHIPLQ96FC7 376 aa13.7□□□□□ -0.22
CIITA-204ENST00000570546 NUP214P35658 2090 aaPredicted RBP13.69□□□□□ -0.22
CIITA-204ENST00000570546 ACKR3P25106 362 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 TRILQ7L0X0 811 aa13.69□□□□□ -0.22
CIITA-204ENST00000570546 ZNF561Q8N587 486 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms