RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 BAG5Q9UL15 447 aa14.34□□□□□ -0.11
CLK3-227ENST00000570296 PSMB11A5LHX3 300 aa14.33□□□□□ -0.12
CLK3-227ENST00000570296 IMPA2O14732 288 aa14.33□□□□□ -0.12
CLK3-227ENST00000570296 PGA5P0DJD9 388 aa14.33□□□□□ -0.12
CLK3-227ENST00000570296 TNFRSF1BP20333 461 aa14.33□□□□□ -0.12
CLK3-227ENST00000570296 STX1BP61266 288 aa14.33□□□□□ -0.12
CLK3-227ENST00000570296 RPL31P62899 125 aaKnown RBP14.33□□□□□ -0.12
CLK3-227ENST00000570296 ABCA11PQ4W5N1 156 aa14.33□□□□□ -0.12
CLK3-227ENST00000570296 ZNF626Q68DY1 528 aa14.33□□□□□ -0.12
CLK3-227ENST00000570296 TMEM200BQ69YZ2 307 aa14.33□□□□□ -0.12
CLK3-227ENST00000570296 DLEU7Q6UYE1 221 aa14.33□□□□□ -0.12
CLK3-227ENST00000570296 ZNF782Q6ZMW2 699 aaPredicted RBP14.33□□□□□ -0.12
CLK3-227ENST00000570296 CAPSLQ8WWF8 208 aa14.33□□□□□ -0.12
CLK3-227ENST00000570296 ROPN1BQ9BZX4 212 aaPredicted RBP14.33□□□□□ -0.12
CLK3-227ENST00000570296 ROPN1Q9HAT0 212 aaPredicted RBP14.33□□□□□ -0.12
CLK3-227ENST00000570296 HECTD4Q9Y4D8 3996 aa14.32□□□□□ -0.12
CLK3-227ENST00000570296 ANOS1P23352 680 aa14.32□□□□□ -0.12
CLK3-227ENST00000570296 GNALP38405 381 aa14.32□□□□□ -0.12
CLK3-227ENST00000570296 GABRA2P47869 451 aa14.32□□□□□ -0.12
CLK3-227ENST00000570296 ENTPD1P49961 510 aa14.32□□□□□ -0.12
CLK3-227ENST00000570296 IFFO1Q0D2I5 559 aa14.32□□□□□ -0.12
CLK3-227ENST00000570296 NFYCQ13952 458 aa14.32□□□□□ -0.12
CLK3-227ENST00000570296 SLC36A3Q495N2 470 aa14.32□□□□□ -0.12
CLK3-227ENST00000570296 ZBED5Q49AG3 693 aa14.32□□□□□ -0.12
CLK3-227ENST00000570296 ZNF770Q6IQ21 691 aaPredicted RBP14.32□□□□□ -0.12
CLK3-227ENST00000570296 DRAM2Q6UX65 266 aa14.32□□□□□ -0.12
CLK3-227ENST00000570296 C18orf65Q6ZTR6 163 aa14.32□□□□□ -0.12
CLK3-227ENST00000570296 CCDC80Q76M96 950 aa14.32□□□□□ -0.12
CLK3-227ENST00000570296 KLHL30-AS1Q8NEE0 82 aa14.32□□□□□ -0.12
CLK3-227ENST00000570296 OR11H6Q8NGC7 330 aa14.32□□□□□ -0.12
CLK3-227ENST00000570296 OR13D1Q8NGV5 346 aa14.32□□□□□ -0.12
CLK3-227ENST00000570296 THAP1Q9NVV9 213 aa14.32□□□□□ -0.12
CLK3-227ENST00000570296 CYB5R1Q9UHQ9 305 aa14.32□□□□□ -0.12
CLK3-227ENST00000570296 SCOCQ9UIL1 159 aa14.32□□□□□ -0.12
CLK3-227ENST00000570296 ZNF222Q9UK12 451 aa14.32□□□□□ -0.12
CLK3-227ENST00000570296 IGKV1D-17A0A075B6S4 117 aa14.31□□□□□ -0.12
CLK3-227ENST00000570296 IGLV1-36A0A0B4J1U3 117 aa14.31□□□□□ -0.12
CLK3-227ENST00000570296 OTX1P32242 354 aaPredicted RBP14.31□□□□□ -0.12
CLK3-227ENST00000570296 RAB25P57735 213 aa14.31□□□□□ -0.12
CLK3-227ENST00000570296 SLC34A1Q06495 639 aa14.31□□□□□ -0.12
CLK3-227ENST00000570296 PTCHD4Q6ZW05 846 aa14.31□□□□□ -0.12
CLK3-227ENST00000570296 CALHM1Q8IU99 346 aa14.31□□□□□ -0.12
CLK3-227ENST00000570296 OR5M8Q8NGP6 311 aa14.31□□□□□ -0.12
CLK3-227ENST00000570296 SPSB4Q96A44 273 aa14.31□□□□□ -0.12
CLK3-227ENST00000570296 SDSLQ96GA7 329 aa14.31□□□□□ -0.12
CLK3-227ENST00000570296 TSSK2Q96PF2 358 aa14.31□□□□□ -0.12
CLK3-227ENST00000570296 SSU72Q9NP77 194 aaKnown RBP14.31□□□□□ -0.12
CLK3-227ENST00000570296 NRIP3Q9NQ35 241 aa14.31□□□□□ -0.12
CLK3-227ENST00000570296 DCTN6O00399 190 aa14.3□□□□□ -0.12
CLK3-227ENST00000570296 AKR7A2O43488 359 aa14.3□□□□□ -0.12
CLK3-227ENST00000570296 XRCC2O43543 280 aa14.3□□□□□ -0.12
CLK3-227ENST00000570296 FRMD6-AS1P0C7T7 363 aa14.3□□□□□ -0.12
CLK3-227ENST00000570296 CCL3L1P16619 93 aa14.3□□□□□ -0.12
CLK3-227ENST00000570296 JUNBP17275 347 aaPredicted RBP14.3□□□□□ -0.12
CLK3-227ENST00000570296 IFNA8P32881 189 aa14.3□□□□□ -0.12
CLK3-227ENST00000570296 CAPZA1P52907 286 aa14.3□□□□□ -0.12
CLK3-227ENST00000570296 MINOS1Q5TGZ0 78 aa14.3□□□□□ -0.12
CLK3-227ENST00000570296 PLBD1Q6P4A8 553 aa14.3□□□□□ -0.12
CLK3-227ENST00000570296 OVCH2Q7RTZ1 564 aa14.3□□□□□ -0.12
CLK3-227ENST00000570296 OR6V1Q8N148 313 aa14.3□□□□□ -0.12
CLK3-227ENST00000570296 RAX2Q96IS3 184 aa14.3□□□□□ -0.12
CLK3-227ENST00000570296 PRRC1Q96M27 445 aa14.3□□□□□ -0.12
CLK3-227ENST00000570296 MICU1Q9BPX6 476 aa14.3□□□□□ -0.12
CLK3-227ENST00000570296 ARGLU1Q9NWB6 273 aaPredicted RBP14.3□□□□□ -0.12
CLK3-227ENST00000570296 CCDC167Q9P0B6 97 aa14.3□□□□□ -0.12
CLK3-227ENST00000570296 A4GNTQ9UNA3 340 aa14.3□□□□□ -0.12
CLK3-227ENST00000570296 HILPDAQ9Y5L2 63 aa14.3□□□□□ -0.12
CLK3-227ENST00000570296 MINOS1-NBL1R4GNA1 71 aa14.3□□□□□ -0.12
CLK3-227ENST00000570296 SEC14L6B5MCN3 397 aa14.29□□□□□ -0.12
CLK3-227ENST00000570296 CCL24O00175 119 aa14.29□□□□□ -0.12
CLK3-227ENST00000570296 SOCS2O14508 198 aa14.29□□□□□ -0.12
CLK3-227ENST00000570296 CDC42EP2O14613 210 aa14.29□□□□□ -0.12
CLK3-227ENST00000570296 SNNO75324 88 aaPredicted RBP14.29□□□□□ -0.12
CLK3-227ENST00000570296 LY86O95711 162 aa14.29□□□□□ -0.12
CLK3-227ENST00000570296 PSG2P11465 335 aa14.29□□□□□ -0.12
CLK3-227ENST00000570296 CDKN2AP42771 156 aaKnown RBP14.29□□□□□ -0.12
CLK3-227ENST00000570296 OR1E2P47887 323 aa14.29□□□□□ -0.12
CLK3-227ENST00000570296 MTPNP58546 118 aa14.29□□□□□ -0.12
CLK3-227ENST00000570296 SEC23BQ15437 767 aa14.29□□□□□ -0.12
CLK3-227ENST00000570296 AGBL2Q5U5Z8 902 aa14.29□□□□□ -0.12
CLK3-227ENST00000570296 LHFPL2Q6ZUX7 228 aa14.29□□□□□ -0.12
CLK3-227ENST00000570296 ZNF695Q8IW36 515 aa14.29□□□□□ -0.12
CLK3-227ENST00000570296 RNF113BQ8IZP6 322 aaKnown RBP14.29□□□□□ -0.12
CLK3-227ENST00000570296 DDB2Q92466 427 aa14.29□□□□□ -0.12
CLK3-227ENST00000570296 GPX7Q96SL4 187 aaPredicted RBP14.29□□□□□ -0.12
CLK3-227ENST00000570296 TM2D3Q9BRN9 247 aa14.29□□□□□ -0.12
CLK3-227ENST00000570296 KAT8Q9H7Z6 458 aaKnown RBP14.29□□□□□ -0.12
CLK3-227ENST00000570296 B9D1Q9UPM9 204 aa14.29□□□□□ -0.12
CLK3-227ENST00000570296 LYVE1Q9Y5Y7 322 aa14.29□□□□□ -0.12
CLK3-227ENST00000570296 TMEM210A6NLX4 147 aa14.28□□□□□ -0.12
CLK3-227ENST00000570296 C17orf98A8MV24 154 aa14.28□□□□□ -0.12
CLK3-227ENST00000570296 PTP4A3O75365 173 aa14.28□□□□□ -0.12
CLK3-227ENST00000570296 VMACQ2NL98 169 aa14.28□□□□□ -0.12
CLK3-227ENST00000570296 TMPRSS11FQ6ZWK6 438 aa14.28□□□□□ -0.12
CLK3-227ENST00000570296 ZNF329Q86UD4 541 aa14.28□□□□□ -0.12
CLK3-227ENST00000570296 MREGQ8N565 214 aa14.28□□□□□ -0.12
CLK3-227ENST00000570296 RPL3LQ92901 407 aaKnown RBP14.28□□□□□ -0.12
CLK3-227ENST00000570296 DUX3Q96PT4 197 aa14.28□□□□□ -0.12
CLK3-227ENST00000570296 RTL8AQ9BWD3 113 aa14.28□□□□□ -0.12
CLK3-227ENST00000570296 ANXA2P2A6NMY6 339 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms