RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 DMRTC1Q5HYR2 192 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 SLC25A30Q5SVS4 291 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 WDR82Q6UXN9 313 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 ZBTB49Q6ZSB9 765 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 C1QL2Q7Z5L3 287 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 ELMOD2Q8IZ81 293 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 OR10H4Q8NGA5 316 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 LRRC29Q8WV35 223 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 HPSE2Q8WWQ2 592 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 RFKQ969G6 155 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 DACT3Q96B18 629 aaPredicted RBP12.53□□□□□ -0.4
VPS39-210ENST00000568357 RNF170Q96K19 258 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 MICU1Q9BPX6 476 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 TLNRD1Q9H1K6 362 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 RNPEPL1Q9HAU8 725 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 IMPAD1Q9NX62 359 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 OR52A1Q9UKL2 312 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 ARHGAP32A7KAX9 2087 aa12.53□□□□□ -0.4
VPS39-210ENST00000568357 IGHV3OR15-7A0A075B7D8 119 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 TRAV38-1A0A0B4J264 116 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 ZNF816-ZNF321PA0A0X1KG74 233 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 A0A1B0GTI1 187 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 LOC110117498-PIK3R3F6TDL0 507 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 RPP14O95059 124 aaKnown RBP12.52□□□□□ -0.41
VPS39-210ENST00000568357 FSHBP01225 129 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 PITPNBP48739 271 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 GNB2P62879 340 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 PAX8Q06710 450 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 RIPPLY1Q0D2K3 151 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 OCLNQ16625 522 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 LIPNQ5VXI9 398 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 WDR25Q64LD2 544 aaPredicted RBP12.52□□□□□ -0.41
VPS39-210ENST00000568357 NLRC3Q7RTR2 1065 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 COMMD2Q86X83 199 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 FAM90A1Q86YD7 464 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 YIPF7Q8N8F6 280 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 SEMA6DQ8NFY4 1073 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 OR8B3Q8NGG8 313 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 NANPQ8TBE9 248 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 RPL3LQ92901 407 aaKnown RBP12.52□□□□□ -0.41
VPS39-210ENST00000568357 SEH1LQ96EE3 360 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 OR8B2Q96RD0 313 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 RTL8AQ9BWD3 113 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 RASSF4Q9H2L5 321 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 OCEL1Q9H607 264 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 CTSZQ9UBR2 303 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 OR5V1Q9UGF6 321 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 GTF2A1LQ9UNN4 478 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 SLC22A13Q9Y226 551 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 SNX5Q9Y5X3 404 aa12.52□□□□□ -0.41
VPS39-210ENST00000568357 METTL15A6NJ78 407 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.51□□□□□ -0.41
VPS39-210ENST00000568357 J3QRE1 110 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 GYPAP02724 150 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 KRT8P05787 483 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 ATP6V1B1P15313 513 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 FAHP16930 419 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 GABRB1P18505 474 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 CFHR2P36980 270 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 MTNR1AP48039 350 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 ELF3P78545 371 aaPredicted RBP12.51□□□□□ -0.41
VPS39-210ENST00000568357 ZNF85Q03923 595 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 CEP78Q5JTW2 689 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 BCL2L15Q5TBC7 163 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 TEX36Q5VZQ5 186 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 ZDHHC23Q8IYP9 409 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 TEX29Q8N6K0 151 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 SCCPDHQ8NBX0 429 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 RAB40AQ8WXH6 277 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 RORBQ92753 470 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 ITFG2Q969R8 447 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 RNFT2Q96EX2 444 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 ABCB9Q9NP78 766 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 CLN8Q9UBY8 286 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.51□□□□□ -0.41
VPS39-210ENST00000568357 PIGLQ9Y2B2 252 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 GMPPBQ9Y5P6 360 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 AUP1Q9Y679 476 aa12.51□□□□□ -0.41
VPS39-210ENST00000568357 KIR2DS1A0A191URI9 304 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 TMEM210A6NLX4 147 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 P2RY10O00398 339 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 ADAM20O43506 726 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 TCF21O43680 179 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 FCN3O75636 299 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 SULT1C4O75897 302 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 DHRS3O75911 302 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 RGS9O75916 674 aaPredicted RBP12.5□□□□□ -0.41
VPS39-210ENST00000568357 EPHA1P21709 976 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 GPM6AP51674 278 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 KCNJ8Q15842 424 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 CEACAM21Q3KPI0 293 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 ZBTB37Q5TC79 503 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 MEDAGQ5VYS4 303 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 KCTD8Q6ZWB6 473 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 MOB3CQ70IA8 216 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 THAP5Q7Z6K1 395 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 CATSPERDQ86XM0 798 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 ENTHD1Q8IYW4 607 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 RHOXF1Q8NHV9 184 aa12.5□□□□□ -0.41
VPS39-210ENST00000568357 RNF166Q96A37 237 aaPredicted RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms