RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 JSRP1Q96MG2 331 aaPredicted RBP5.48□□□□□ -1.53
CLN3-223ENST00000566472 UCN2Q96RP3 112 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 S100A13Q99584 98 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 DHRS9Q9BPW9 319 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 NICN1Q9BSH3 213 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 SOX7Q9BT81 388 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 PDCD10Q9BUL8 212 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 RBM24Q9BX46 236 aaKnown RBP5.48□□□□□ -1.53
CLN3-223ENST00000566472 PECRQ9BY49 303 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 LINC00470Q9BZP3 86 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 NMES1Q9C002 83 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 SPRY4Q9C004 299 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 RAB18Q9NP72 206 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 IL36GQ9NZH8 169 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 ABI3Q9P2A4 366 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 HSF4Q9ULV5 492 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 BOKQ9UMX3 212 aaPredicted RBP5.48□□□□□ -1.53
CLN3-223ENST00000566472 EDARQ9UNE0 448 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 GPR132Q9UNW8 380 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 OSGIN2Q9Y236 505 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 ABCA7Q8IZY2 2146 aa5.48□□□□□ -1.53
CLN3-223ENST00000566472 IGKV3D-15A0A087WSY6 115 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 IGHV3-15A0A0B4J1V0 119 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 MFSD2BA6NFX1 497 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 FIGNL2A6NMB9 653 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 F5H5K5 113 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 STMND1H3BQB6 276 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 XRCC2O43543 280 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 SYNGR3O43761 229 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 CXCL13O43927 109 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 RAD51DO75771 328 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 PMP2P02689 132 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 HPNP05981 417 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 FCGR2AP12318 317 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 FAHP16930 419 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 POU3F2P20265 443 aaPredicted RBP5.47□□□□□ -1.53
CLN3-223ENST00000566472 DTYMKP23919 212 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 DLSTP36957 453 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 PMELP40967 661 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 OR3A2P47893 321 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 CYB561P49447 251 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 ARPC4P59998 168 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 OC90Q02509 493 aaPredicted RBP5.47□□□□□ -1.53
CLN3-223ENST00000566472 Q0VFX4 171 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 UBE2V2Q15819 145 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 RSPO1Q2MKA7 263 aaPredicted RBP5.47□□□□□ -1.53
CLN3-223ENST00000566472 SLC22A6Q4U2R8 563 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 ZNF468Q5VIY5 522 aaPredicted RBP5.47□□□□□ -1.53
CLN3-223ENST00000566472 TMEM42Q69YG0 159 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 ZNF660Q6AZW8 331 aaPredicted RBP5.47□□□□□ -1.53
CLN3-223ENST00000566472 OR52W1Q6IF63 320 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 CRIP3Q6Q6R5 217 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 PLXDC2Q6UX71 529 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 C17orf107Q6ZR85 190 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 RAB11FIP2Q7L804 512 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 OVCH2Q7RTZ1 564 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 ZNF546Q86UE3 836 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 PDZD9Q8IXQ8 264 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 ZBTB44Q8NCP5 570 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 PXT1Q8NFP0 134 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 OR10D3Q8NH80 312 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 THAP6Q8TBB0 222 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 SUN5Q8TC36 379 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 C17orf50Q8WW18 174 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 ST8SIA2Q92186 375 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 EMG1Q92979 244 aaKnown RBP5.47□□□□□ -1.53
CLN3-223ENST00000566472 SGK3Q96BR1 496 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 FBXO17Q96EF6 278 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 MRPS24Q96EL2 167 aaKnown RBP5.47□□□□□ -1.53
CLN3-223ENST00000566472 ARHGAP5-AS1Q96IT6 56 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 Q96M66 194 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 IP6K3Q96PC2 410 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 FOXB1Q99853 325 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 FAM173AQ9BQD7 235 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 GPR87Q9BY21 358 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 REG4Q9BYZ8 158 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 DNTTIP1Q9H147 329 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 METTL9Q9H1A3 318 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 PPA2Q9H2U2 334 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 BANF2Q9H503 90 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 RNF122Q9H9V4 155 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 PRDM6Q9NQX0 595 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 PCDHB16Q9NRJ7 776 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 SDHAF2Q9NX18 166 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 P4HTMQ9NXG6 502 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 RASL12Q9NYN1 266 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 RDH8Q9NYR8 311 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 B4GALT7Q9UBV7 327 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 PIGLQ9Y2B2 252 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 TIMM10BQ9Y5J6 103 aa5.47□□□□□ -1.53
CLN3-223ENST00000566472 CCDC187A0A096LP49 1063 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 A0A0G2JMM0 328 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 hCG_38984A0A1B0GV85 526 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 A0A1W2PPB8 328 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 A0A1W2PRS3 328 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 RNF222A6NCQ9 220 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 KIR3DP1A8MWS1 328 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 KRBOX1C9JBD0 128 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 E9PLN8 166 aa5.46□□□□□ -1.54
CLN3-223ENST00000566472 G3V3Y1 287 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms