RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 BRICD5Q6PL45 260 aa15.43■□□□□ 0.06
CLN3-218ENST00000565688 OR10Z1Q8NGY1 313 aa15.43■□□□□ 0.06
CLN3-218ENST00000565688 CHID1Q9BWS9 393 aa15.43■□□□□ 0.06
CLN3-218ENST00000565688 HAO2Q9NYQ3 351 aa15.43■□□□□ 0.06
CLN3-218ENST00000565688 TGP01266 2768 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 ACOT8O14734 319 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 PRODHO43272 600 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 GPR137BO60478 399 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 CST4P01036 141 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 IGHV4-59P01825 116 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 HMGN1P05114 100 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 TGM4P49221 684 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 GUCA2AQ02747 115 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 STUMQ69YW2 141 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 PLBD1Q6P4A8 553 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 GDPGP1Q6ZNW5 385 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 FAM216BQ8N7L0 139 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 THEM6Q8WUY1 208 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 LRTOMTQ8WZ04 291 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 OR5P3Q8WZ94 311 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 CITED1Q99966 193 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 PPP1R3EQ9H7J1 279 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 NIPAL2Q9H841 368 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 DNAJB11Q9UBS4 358 aa15.42■□□□□ 0.06
CLN3-218ENST00000565688 A0A1B0GW55 424 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 NKX6-3A6NJ46 265 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 ZNF850A8MQ14 1090 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 DUX4L2P0CJ85 424 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 DUX4L3P0CJ86 424 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 DUX4L4P0CJ87 422 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 DUX4L5P0CJ88 424 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 DUX4L6P0CJ89 424 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 DUX4L7P0CJ90 424 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 EEF1B2P24534 225 aaKnown RBP15.41■□□□□ 0.06
CLN3-218ENST00000565688 POU1F1P28069 291 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 PSMA6P60900 246 aaKnown RBP15.41■□□□□ 0.06
CLN3-218ENST00000565688 SRSF4Q08170 494 aaKnown RBP15.41■□□□□ 0.06
CLN3-218ENST00000565688 PRDX4Q13162 271 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 IKZF1Q13422 519 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 GINS1Q14691 196 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 FAM76BQ5HYJ3 339 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 DUX4L9Q6RFH8 374 aaPredicted RBP15.41■□□□□ 0.06
CLN3-218ENST00000565688 PDZD9Q8IXQ8 264 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 FGFRL1Q8N441 504 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 PIP4P2Q8N4L2 257 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 C8orf46Q8TAG6 207 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 ITFG2Q969R8 447 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 CCDC124Q96CT7 223 aaKnown RBP15.41■□□□□ 0.06
CLN3-218ENST00000565688 MED30Q96HR3 178 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 RAB3IPQ96QF0 476 aaPredicted RBP15.41■□□□□ 0.06
CLN3-218ENST00000565688 CCT8L2Q96SF2 557 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 PKP2Q99959 881 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 DCTN5Q9BTE1 182 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 ZNF556Q9HAH1 456 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 PDP1Q9P0J1 537 aaPredicted RBP15.41■□□□□ 0.06
CLN3-218ENST00000565688 DUX4Q9UBX2 424 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 RNF114Q9Y508 228 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 NOTCH1P46531 2555 aa15.41■□□□□ 0.06
CLN3-218ENST00000565688 BTBD17A6NE02 478 aa15.4■□□□□ 0.06
CLN3-218ENST00000565688 M0QZ24 198 aa15.4■□□□□ 0.06
CLN3-218ENST00000565688 GNGT2O14610 69 aa15.4■□□□□ 0.06
CLN3-218ENST00000565688 TIMM23O14925 209 aa15.4■□□□□ 0.06
CLN3-218ENST00000565688 SELENOFO60613 162 aa15.4■□□□□ 0.06
CLN3-218ENST00000565688 FBP1P09467 338 aa15.4■□□□□ 0.06
CLN3-218ENST00000565688 ACKR3P25106 362 aa15.4■□□□□ 0.06
CLN3-218ENST00000565688 ELF3P78545 371 aaPredicted RBP15.4■□□□□ 0.06
CLN3-218ENST00000565688 DEFA6Q01524 100 aa15.4■□□□□ 0.06
CLN3-218ENST00000565688 SLC35D3Q5M8T2 416 aa15.4■□□□□ 0.06
CLN3-218ENST00000565688 C1orf122Q6ZSJ8 110 aa15.4■□□□□ 0.06
CLN3-218ENST00000565688 KCTD8Q6ZWB6 473 aa15.4■□□□□ 0.06
CLN3-218ENST00000565688 ZDHHC23Q8IYP9 409 aa15.4■□□□□ 0.06
CLN3-218ENST00000565688 PAPD5Q8NDF8 572 aaKnown RBP15.4■□□□□ 0.06
CLN3-218ENST00000565688 RPL3LQ92901 407 aaKnown RBP15.4■□□□□ 0.06
CLN3-218ENST00000565688 SEH1LQ96EE3 360 aa15.4■□□□□ 0.06
CLN3-218ENST00000565688 HIST1H2AAQ96QV6 131 aa15.4■□□□□ 0.06
CLN3-218ENST00000565688 TEX12Q9BXU0 123 aa15.4■□□□□ 0.06
CLN3-218ENST00000565688 AMY2BP19961 511 aa15.39■□□□□ 0.05
CLN3-218ENST00000565688 PDLIM3Q53GG5 364 aaPredicted RBP15.39■□□□□ 0.05
CLN3-218ENST00000565688 CPOQ8IVL8 374 aa15.39■□□□□ 0.05
CLN3-218ENST00000565688 ADGRG5Q8IZF4 528 aa15.39■□□□□ 0.05
CLN3-218ENST00000565688 OR5T2Q8NGG2 359 aa15.39■□□□□ 0.05
CLN3-218ENST00000565688 LINC01006Q8NI28 216 aa15.39■□□□□ 0.05
CLN3-218ENST00000565688 H1FXQ92522 213 aaKnown RBP15.39■□□□□ 0.05
CLN3-218ENST00000565688 PIGCQ92535 297 aa15.39■□□□□ 0.05
CLN3-218ENST00000565688 RNF170Q96K19 258 aa15.39■□□□□ 0.05
CLN3-218ENST00000565688 WDR13Q9H1Z4 485 aa15.39■□□□□ 0.05
CLN3-218ENST00000565688 C1orf21Q9H246 121 aa15.39■□□□□ 0.05
CLN3-218ENST00000565688 SNTG1Q9NSN8 517 aa15.39■□□□□ 0.05
CLN3-218ENST00000565688 ACOD1A6NK06 481 aa15.38■□□□□ 0.05
CLN3-218ENST00000565688 AQP12BA6NM10 295 aa15.38■□□□□ 0.05
CLN3-218ENST00000565688 E2F6O75461 281 aa15.38■□□□□ 0.05
CLN3-218ENST00000565688 CLPXO76031 633 aa15.38■□□□□ 0.05
CLN3-218ENST00000565688 OSMP13725 252 aa15.38■□□□□ 0.05
CLN3-218ENST00000565688 GMFBP60983 142 aa15.38■□□□□ 0.05
CLN3-218ENST00000565688 CDK5Q00535 292 aa15.38■□□□□ 0.05
CLN3-218ENST00000565688 ZNF788Q6ZQV5 615 aa15.38■□□□□ 0.05
CLN3-218ENST00000565688 AQP12AQ8IXF9 295 aa15.38■□□□□ 0.05
CLN3-218ENST00000565688 CCDC197Q8NCU1 140 aa15.38■□□□□ 0.05
CLN3-218ENST00000565688 OR8B12Q8NGG6 310 aa15.38■□□□□ 0.05
CLN3-218ENST00000565688 ANGPTL6Q8NI99 470 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms