RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 TBX15Q96SF7 602 aa18.6■□□□□ 0.57
CLN3-215ENST00000565236 PKP2Q99959 881 aa18.6■□□□□ 0.57
CLN3-215ENST00000565236 CADM1Q9BY67 442 aaKnown RBP18.6■□□□□ 0.57
CLN3-215ENST00000565236 PRDM13Q9H4Q3 707 aa18.6■□□□□ 0.57
CLN3-215ENST00000565236 CENPVL3A0A0U1RRI6 287 aa18.59■□□□□ 0.57
CLN3-215ENST00000565236 ACOD1A6NK06 481 aa18.59■□□□□ 0.57
CLN3-215ENST00000565236 TMEM210A6NLX4 147 aa18.59■□□□□ 0.57
CLN3-215ENST00000565236 SRRM5B3KS81 715 aa18.59■□□□□ 0.57
CLN3-215ENST00000565236 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP18.59■□□□□ 0.57
CLN3-215ENST00000565236 FCN3O75636 299 aa18.59■□□□□ 0.57
CLN3-215ENST00000565236 DAPP51397 102 aa18.59■□□□□ 0.57
CLN3-215ENST00000565236 IL13RA1P78552 427 aa18.59■□□□□ 0.57
CLN3-215ENST00000565236 PDCD1Q15116 288 aa18.59■□□□□ 0.57
CLN3-215ENST00000565236 PTGES3Q15185 160 aaKnown RBP18.59■□□□□ 0.57
CLN3-215ENST00000565236 RUSC1-AS1Q66K80 236 aa18.59■□□□□ 0.57
CLN3-215ENST00000565236 FAHD1Q6P587 224 aa18.59■□□□□ 0.57
CLN3-215ENST00000565236 DEGS2Q6QHC5 323 aa18.59■□□□□ 0.57
CLN3-215ENST00000565236 SHISA2Q6UWI4 295 aa18.59■□□□□ 0.57
CLN3-215ENST00000565236 FAM81AQ8TBF8 368 aa18.59■□□□□ 0.57
CLN3-215ENST00000565236 GATAD2BQ8WXI9 593 aa18.59■□□□□ 0.57
CLN3-215ENST00000565236 RPL3LQ92901 407 aaKnown RBP18.59■□□□□ 0.57
CLN3-215ENST00000565236 SEH1LQ96EE3 360 aa18.59■□□□□ 0.57
CLN3-215ENST00000565236 MROQ9BYG7 248 aa18.59■□□□□ 0.57
CLN3-215ENST00000565236 CNTD2Q9H8S5 307 aa18.59■□□□□ 0.57
CLN3-215ENST00000565236 NOX4Q9NPH5 578 aa18.59■□□□□ 0.57
CLN3-215ENST00000565236 DNAJB11Q9UBS4 358 aa18.59■□□□□ 0.57
CLN3-215ENST00000565236 RPUSD1Q9UJJ7 312 aaKnown RBP18.59■□□□□ 0.57
CLN3-215ENST00000565236 TMEM269A0A1B0GVZ9 245 aa18.58■□□□□ 0.56
CLN3-215ENST00000565236 PSMD9O00233 223 aa18.58■□□□□ 0.56
CLN3-215ENST00000565236 SPRY1O43609 319 aaPredicted RBP18.58■□□□□ 0.56
CLN3-215ENST00000565236 MRPL3P09001 348 aaKnown RBP18.58■□□□□ 0.56
CLN3-215ENST00000565236 MAP2K3P46734 347 aa18.58■□□□□ 0.56
CLN3-215ENST00000565236 GMFBP60983 142 aa18.58■□□□□ 0.56
CLN3-215ENST00000565236 ELF3P78545 371 aaPredicted RBP18.58■□□□□ 0.56
CLN3-215ENST00000565236 ZDHHC23Q8IYP9 409 aa18.58■□□□□ 0.56
CLN3-215ENST00000565236 SCCPDHQ8NBX0 429 aa18.58■□□□□ 0.56
CLN3-215ENST00000565236 OR5T2Q8NGG2 359 aa18.58■□□□□ 0.56
CLN3-215ENST00000565236 OR10Z1Q8NGY1 313 aa18.58■□□□□ 0.56
CLN3-215ENST00000565236 OR5K1Q8NHB7 308 aa18.58■□□□□ 0.56
CLN3-215ENST00000565236 UTP4Q969X6 686 aaKnown RBP18.58■□□□□ 0.56
CLN3-215ENST00000565236 PRRG3Q9BZD7 231 aa18.58■□□□□ 0.56
CLN3-215ENST00000565236 SIRPDQ9H106 197 aa18.58■□□□□ 0.56
CLN3-215ENST00000565236 HAO2Q9NYQ3 351 aa18.58■□□□□ 0.56
CLN3-215ENST00000565236 TMEM14AQ9Y6G1 99 aa18.58■□□□□ 0.56
CLN3-215ENST00000565236 A0A0U1RQV5 110 aa18.57■□□□□ 0.56
CLN3-215ENST00000565236 A0A1B0GW55 424 aa18.57■□□□□ 0.56
CLN3-215ENST00000565236 CCDC182A6NF36 153 aa18.57■□□□□ 0.56
CLN3-215ENST00000565236 NDUFB3O43676 98 aa18.57■□□□□ 0.56
CLN3-215ENST00000565236 DUX4L2P0CJ85 424 aa18.57■□□□□ 0.56
CLN3-215ENST00000565236 DUX4L3P0CJ86 424 aa18.57■□□□□ 0.56
CLN3-215ENST00000565236 DUX4L4P0CJ87 422 aa18.57■□□□□ 0.56
CLN3-215ENST00000565236 DUX4L5P0CJ88 424 aa18.57■□□□□ 0.56
CLN3-215ENST00000565236 DUX4L6P0CJ89 424 aa18.57■□□□□ 0.56
CLN3-215ENST00000565236 DUX4L7P0CJ90 424 aa18.57■□□□□ 0.56
CLN3-215ENST00000565236 ESRRGP62508 458 aa18.57■□□□□ 0.56
CLN3-215ENST00000565236 FAM76BQ5HYJ3 339 aa18.57■□□□□ 0.56
CLN3-215ENST00000565236 DUX4L9Q6RFH8 374 aaPredicted RBP18.57■□□□□ 0.56
CLN3-215ENST00000565236 Q6YL49 198 aa18.57■□□□□ 0.56
CLN3-215ENST00000565236 ASB17Q8WXJ9 295 aa18.57■□□□□ 0.56
CLN3-215ENST00000565236 LHX4Q969G2 390 aa18.57■□□□□ 0.56
CLN3-215ENST00000565236 FAM71F1Q96KD3 344 aaPredicted RBP18.57■□□□□ 0.56
CLN3-215ENST00000565236 UNKLQ9H9P5 680 aaKnown RBP18.57■□□□□ 0.56
CLN3-215ENST00000565236 TNFRSF19Q9NS68 423 aa18.57■□□□□ 0.56
CLN3-215ENST00000565236 H2AFY2Q9P0M6 372 aaPredicted RBP18.57■□□□□ 0.56
CLN3-215ENST00000565236 DUX4Q9UBX2 424 aa18.57■□□□□ 0.56
CLN3-215ENST00000565236 IGHV1-69DA0A0B4J2H0 117 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 ZNF816-ZNF321PA0A0X1KG74 233 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 POM121CA8CG34 1229 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 GPR37O15354 613 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 ZNF254O75437 659 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 IGHV1-69P01742 117 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 DCTDP32321 178 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 BNIP1Q12981 228 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 IKZF1Q13422 519 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 ATPAF1Q5TC12 328 aaPredicted RBP18.56■□□□□ 0.56
CLN3-215ENST00000565236 COMMD2Q86X83 199 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 ZNF679Q8IYX0 411 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 FGFRL1Q8N441 504 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 FAM216BQ8N7L0 139 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 ITFG2Q969R8 447 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 WDR13Q9H1Z4 485 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 KRT84Q9NSB2 600 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 SNTG1Q9NSN8 517 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 ACOXLQ9NUZ1 547 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 FAM206AQ9NX38 181 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 KPTNQ9Y664 436 aa18.56■□□□□ 0.56
CLN3-215ENST00000565236 G3V2T6 193 aa18.55■□□□□ 0.56
CLN3-215ENST00000565236 AKR7A2O43488 359 aa18.55■□□□□ 0.56
CLN3-215ENST00000565236 PRKYO43930 277 aa18.55■□□□□ 0.56
CLN3-215ENST00000565236 TGM4P49221 684 aa18.55■□□□□ 0.56
CLN3-215ENST00000565236 RASSF2P50749 326 aa18.55■□□□□ 0.56
CLN3-215ENST00000565236 GPM6AP51674 278 aa18.55■□□□□ 0.56
CLN3-215ENST00000565236 ROM1Q03395 351 aa18.55■□□□□ 0.56
CLN3-215ENST00000565236 CDONQ4KMG0 1287 aa18.55■□□□□ 0.56
CLN3-215ENST00000565236 LRRC10Q5BKY1 277 aa18.55■□□□□ 0.56
CLN3-215ENST00000565236 STUMQ69YW2 141 aa18.55■□□□□ 0.56
CLN3-215ENST00000565236 MEPCEQ7L2J0 689 aaKnown RBP18.55■□□□□ 0.56
CLN3-215ENST00000565236 HPSE2Q8WWQ2 592 aa18.55■□□□□ 0.56
CLN3-215ENST00000565236 TAF15Q92804 592 aaKnown RBP eCLIP18.55■□□□□ 0.56
CLN3-215ENST00000565236 TMIGD2Q96BF3 282 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms