RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 LHBP01229 141 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 IGHV2-5P01817 119 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 MT-ND5P03915 603 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 KRT8P05787 483 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 GRPP07492 148 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 ZNF19P17023 458 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 CD80P33681 288 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 RAB40BQ12829 278 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 ZNF829Q3KNS6 432 aaPredicted RBP7.72□□□□□ -1.17
VPS35-206ENST00000565228 FAM76BQ5HYJ3 339 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 CEP78Q5JTW2 689 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 BCL2L15Q5TBC7 163 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 C1orf229Q6ZS94 237 aaPredicted RBP7.72□□□□□ -1.17
VPS35-206ENST00000565228 IL17RELQ6ZVW7 336 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 OR1M1Q8NGA1 313 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 RPS4Y2Q8TD47 263 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 RPL3LQ92901 407 aaKnown RBP7.72□□□□□ -1.17
VPS35-206ENST00000565228 ADAT3Q96EY9 351 aaPredicted RBP7.72□□□□□ -1.17
VPS35-206ENST00000565228 DIRC2Q96SL1 478 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 TLNRD1Q9H1K6 362 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 RGCCQ9H4X1 137 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 C8orf4Q9NR00 106 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 GPR173Q9NS66 373 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 UBAP1Q9NZ09 502 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 PLA2G2EQ9NZK7 142 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 CTSZQ9UBR2 303 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 PSORS1C1Q9UIG5 152 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 GTF2A1LQ9UNN4 478 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 PPP1R3CQ9UQK1 317 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 PIGLQ9Y2B2 252 aa7.72□□□□□ -1.17
VPS35-206ENST00000565228 RPL36Q9Y3U8 105 aaKnown RBP7.72□□□□□ -1.17
VPS35-206ENST00000565228 IGHV3OR15-7A0A075B7D8 119 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 LOC107986453A0A1B0GWG9 222 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 GMDSO60547 372 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 APOC1P02654 83 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 ERCC1P07992 297 aaPredicted RBP7.71□□□□□ -1.18
VPS35-206ENST00000565228 HTR1AP08908 422 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 MYF6P23409 242 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 ATP6V1E1P36543 226 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 CDH15P55291 814 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 IL18R1Q13478 541 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 UBE2V2Q15819 145 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 ZNF181Q2M3W8 571 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 HFEQ30201 348 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 SFRP4Q6FHJ7 346 aaPredicted RBP7.71□□□□□ -1.18
VPS35-206ENST00000565228 WDR82Q6UXN9 313 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 IZUMO2Q6UXV1 221 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 ZNF841Q6ZN19 808 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 THAP5Q7Z6K1 395 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 LRRC28Q86X40 367 aaPredicted RBP7.71□□□□□ -1.18
VPS35-206ENST00000565228 BATF2Q8N1L9 274 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 KCTD12Q96CX2 325 aaKnown RBP7.71□□□□□ -1.18
VPS35-206ENST00000565228 ORAI1Q96D31 301 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 PDCD1LG2Q9BQ51 273 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 TMEM246Q9BRR3 403 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 PAPOLGQ9BWT3 736 aaKnown RBP7.71□□□□□ -1.18
VPS35-206ENST00000565228 EGLN1Q9GZT9 426 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 WDR13Q9H1Z4 485 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 OR51I2Q9H344 312 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 ZNF665Q9H7R5 613 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 LPAR2Q9HBW0 351 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 PLCXD1Q9NUJ7 323 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 C1orf123Q9NWV4 160 aa7.71□□□□□ -1.18
VPS35-206ENST00000565228 DIMT1Q9UNQ2 313 aaKnown RBP7.71□□□□□ -1.18
VPS35-206ENST00000565228 RRP15Q9Y3B9 282 aaKnown RBP7.71□□□□□ -1.18
VPS35-206ENST00000565228 STAB1Q9NY15 2570 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 ZNF816-ZNF321PA0A0X1KG74 233 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 CEACAM18A8MTB9 384 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 CLDN25C9JDP6 229 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 F8VVB4 439 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 F8VWA3 439 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 H0YJX3 145 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 TRAPPC2LH3BP13 241 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 SLC1A7O00341 560 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 CDIPTO14735 213 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 PLPP2O43688 288 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 SYNGR1O43759 233 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 DHRS3O75911 302 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 ZFPL1O95159 310 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 TNFRSF1AP19438 455 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 DDOSTP39656 456 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 SRP9P49458 86 aaKnown RBP7.7□□□□□ -1.18
VPS35-206ENST00000565228 CHN2P52757 468 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 RPS11P62280 158 aaKnown RBP eCLIP7.7□□□□□ -1.18
VPS35-206ENST00000565228 BTG1P62324 171 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 PAX2Q02962 417 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 ST3GAL4Q11206 333 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 ALKBH1Q13686 389 aaKnown RBP7.7□□□□□ -1.18
VPS35-206ENST00000565228 ZMAT1Q5H9K5 638 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 C6orf141Q5SZD1 244 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 MOB3CQ70IA8 216 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 AHSA2Q719I0 299 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 PRIMA1Q86XR5 153 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 KLBQ86Z14 1044 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 CALHM1Q8IU99 346 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 C8orf59Q8N0T1 100 aaPredicted RBP7.7□□□□□ -1.18
VPS35-206ENST00000565228 SYS1Q8N2H4 156 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 CELF2-AS1Q8N7Q2 184 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 ZFP41Q8N8Y5 198 aa7.7□□□□□ -1.18
VPS35-206ENST00000565228 SCCPDHQ8NBX0 429 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms