RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 PAPOLGQ9BWT3 736 aaKnown RBP12.3□□□□□ -0.44
CLN3-213ENST00000565047 MS4A7Q9GZW8 240 aaPredicted RBP12.3□□□□□ -0.44
CLN3-213ENST00000565047 GABARAPL1Q9H0R8 117 aa12.3□□□□□ -0.44
CLN3-213ENST00000565047 SIRPDQ9H106 197 aa12.3□□□□□ -0.44
CLN3-213ENST00000565047 MMADHCQ9H3L0 296 aaPredicted RBP12.3□□□□□ -0.44
CLN3-213ENST00000565047 CMYA5Q8N3K9 4069 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 CENPVL3A0A0U1RRI6 287 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 MDFIC2A0A1B0GVS7 189 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 hCG_1807616A0A1W2PRN6 198 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 ZNF850A8MQ14 1090 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 G3V2T6 193 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 M0R129 80 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 HAX1O00165 279 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 PSMD9O00233 223 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 MRPL3P09001 348 aaKnown RBP12.29□□□□□ -0.44
CLN3-213ENST00000565047 TGM4P49221 684 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 RPS7P62081 194 aaKnown RBP12.29□□□□□ -0.44
CLN3-213ENST00000565047 IL5RAQ01344 420 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 BAMBIQ13145 260 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 SNCBQ16143 134 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 WDR38Q5JTN6 314 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 STUMQ69YW2 141 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 BRD3OSQ6XYD6 125 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 BTN2A1Q7KYR7 527 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 MEPCEQ7L2J0 689 aaKnown RBP12.29□□□□□ -0.44
CLN3-213ENST00000565047 KRT77Q7Z794 578 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 ZNF679Q8IYX0 411 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 ITFG2Q969R8 447 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 C12orf43Q96C57 262 aaKnown RBP12.29□□□□□ -0.44
CLN3-213ENST00000565047 WDFY2Q96P53 400 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 CCL13Q99616 98 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 PKP2Q99959 881 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 WDR13Q9H1Z4 485 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 ZMAT3Q9HA38 289 aaKnown RBP12.29□□□□□ -0.44
CLN3-213ENST00000565047 HAO2Q9NYQ3 351 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 AP4S1Q9Y587 144 aa12.29□□□□□ -0.44
CLN3-213ENST00000565047 TMEM269A0A1B0GVZ9 245 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 TMEM210A6NLX4 147 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 P2RY10O00398 339 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 TMPRSS2O15393 492 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 ZNF254O75437 659 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 POLR2IP36954 125 aaKnown RBP12.28□□□□□ -0.44
CLN3-213ENST00000565047 GNALP38405 381 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 MTNR1AP48039 350 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 BPIFB3P59826 476 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 MFGE8Q08431 387 aaPredicted RBP12.28□□□□□ -0.44
CLN3-213ENST00000565047 MICBQ29980 383 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 DEFB112Q30KQ8 113 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 NXNL2Q5VZ03 156 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 KCTD18Q6PI47 426 aaPredicted RBP12.28□□□□□ -0.44
CLN3-213ENST00000565047 RBMS3Q6XE24 437 aaKnown RBP12.28□□□□□ -0.44
CLN3-213ENST00000565047 Q6ZSR3 168 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 AMIGO2Q86SJ2 522 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 TCEANCQ8N8B7 351 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 SCCPDHQ8NBX0 429 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 OR10Z1Q8NGY1 313 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 TMEM163Q8TC26 289 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 LRTOMTQ8WZ04 291 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 RPL3LQ92901 407 aaKnown RBP12.28□□□□□ -0.44
CLN3-213ENST00000565047 RAB3IPQ96QF0 476 aaPredicted RBP12.28□□□□□ -0.44
CLN3-213ENST00000565047 MICU1Q9BPX6 476 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 TEX12Q9BXU0 123 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 MROQ9BYG7 248 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 PBOV1Q9GZY1 135 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 ADGRL4Q9HBW9 690 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 KRT84Q9NSB2 600 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 KIF17Q9P2E2 1029 aa12.28□□□□□ -0.44
CLN3-213ENST00000565047 NUFIP1Q9UHK0 495 aaKnown RBP12.28□□□□□ -0.44
CLN3-213ENST00000565047 RPUSD1Q9UJJ7 312 aaKnown RBP12.28□□□□□ -0.44
CLN3-213ENST00000565047 ZNF816-ZNF321PA0A0X1KG74 233 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 ANXA2P2A6NMY6 339 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 MAGEB4O15481 346 aaPredicted RBP12.27□□□□□ -0.45
CLN3-213ENST00000565047 ATP5HO75947 161 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 TOX4O94842 621 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 ECDO95905 644 aaPredicted RBP12.27□□□□□ -0.45
CLN3-213ENST00000565047 TTRP02766 147 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 FASP25445 335 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 RUSC1-AS1Q66K80 236 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 ASRGL1Q7L266 308 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 ZDHHC13Q8IUH4 622 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 FTMTQ8N4E7 242 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 FAM216BQ8N7L0 139 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 ANGPTL6Q8NI99 470 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 ASB17Q8WXJ9 295 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 PIGCQ92535 297 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 TAF15Q92804 592 aaKnown RBP eCLIP12.27□□□□□ -0.45
CLN3-213ENST00000565047 DMRTB1Q96MA1 342 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 PCGF1Q9BSM1 259 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 RTL8AQ9BWD3 113 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 OR51I2Q9H344 312 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 CNTD2Q9H8S5 307 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 ABCB9Q9NP78 766 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 TMEM14AQ9Y6G1 99 aa12.27□□□□□ -0.45
CLN3-213ENST00000565047 A0A1B0GTI1 187 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 E9PQ18 207 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 RHBDL1O75783 438 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 SELLP14151 372 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 ATP6V1B1P15313 513 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 RASSF2P50749 326 aa12.26□□□□□ -0.45
CLN3-213ENST00000565047 ARF6P62330 175 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms