RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ACAA1P09110 424 aaPredicted RBP5.89□□□□□ -1.47
VPS4A-203ENST00000564399 KDELR2P33947 212 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 RPS27P42677 84 aaKnown RBP5.89□□□□□ -1.47
VPS4A-203ENST00000564399 SELENOWP63302 87 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 SSX2Q16385 188 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 TIGD6Q17RP2 521 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 ZNF782Q6ZMW2 699 aaPredicted RBP5.89□□□□□ -1.47
VPS4A-203ENST00000564399 KCTD8Q6ZWB6 473 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 PIGWQ7Z7B1 504 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 VTCN1Q7Z7D3 282 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 DYNAPQ8N1N2 210 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 CYB561A3Q8NBI2 242 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 ZNRF1Q8ND25 227 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 OR4X2Q8NGF9 303 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 OR4C15Q8NGM1 316 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 OR4K13Q8NH42 304 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 ANGPTL6Q8NI99 470 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 TFAP2CQ92754 450 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 RPL3LQ92901 407 aaKnown RBP5.89□□□□□ -1.47
VPS4A-203ENST00000564399 MYDGFQ969H8 173 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 RSRC1Q96IZ7 334 aaKnown RBP5.89□□□□□ -1.47
VPS4A-203ENST00000564399 MAP6Q96JE9 813 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 GPX7Q96SL4 187 aaPredicted RBP5.89□□□□□ -1.47
VPS4A-203ENST00000564399 NMNAT3Q96T66 252 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 ASCL2Q99929 193 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 MICU1Q9BPX6 476 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 COPS4Q9BT78 406 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 PAPOLGQ9BWT3 736 aaKnown RBP5.89□□□□□ -1.47
VPS4A-203ENST00000564399 C19orf12Q9NSK7 152 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 CENPMQ9NSP4 180 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 NLKQ9UBE8 527 aa5.89□□□□□ -1.47
VPS4A-203ENST00000564399 ZMAT5Q9UDW3 170 aaKnown RBP5.89□□□□□ -1.47
VPS4A-203ENST00000564399 DSCAML1Q8TD84 2053 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 LCE6AA0A183 80 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 UNC119BA6NIH7 251 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 OR2AT4A6NND4 320 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 RHBDL1O75783 438 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 ZFPL1O95159 310 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 ZNF682O95780 498 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 ARG1P05089 322 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 GLRA1P23415 457 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 NOS3P29474 1203 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 SLC25A1P53007 311 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 ERVFRD-1P60508 538 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 MAGOHP61326 146 aaKnown RBP5.88□□□□□ -1.47
VPS4A-203ENST00000564399 RPL31P62899 125 aaKnown RBP5.88□□□□□ -1.47
VPS4A-203ENST00000564399 DGCR2P98153 550 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 IL5RAQ01344 420 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 SPIBQ01892 262 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 KIAA2026Q5HYC2 2103 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 TCTEX1D4Q5JR98 221 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 AGBL2Q5U5Z8 902 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 FKBP9P1Q75LS8 142 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 SLC16A9Q7RTY1 509 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 CYP4Z1Q86W10 505 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 MRPL41Q8IXM3 137 aaKnown RBP5.88□□□□□ -1.47
VPS4A-203ENST00000564399 LINC00482Q8N8I6 264 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 Q8NFD4 153 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 OR51D1Q8NGF3 324 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 OR10Z1Q8NGY1 313 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 OR5K1Q8NHB7 308 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 TSPEARQ8WU66 669 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 FOXRED1Q96CU9 486 aaPredicted RBP5.88□□□□□ -1.47
VPS4A-203ENST00000564399 ZNF649Q9BS31 505 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 MCRIP2Q9BUT9 160 aaKnown RBP5.88□□□□□ -1.47
VPS4A-203ENST00000564399 RTL8AQ9BWD3 113 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 TLNRD1Q9H1K6 362 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 FN3KQ9H479 309 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 PPP1R3EQ9H7J1 279 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 PALMDQ9NP74 551 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 MRPL22Q9NWU5 206 aaKnown RBP5.88□□□□□ -1.47
VPS4A-203ENST00000564399 USE1Q9NZ43 259 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 KCNG2Q9UJ96 466 aa5.88□□□□□ -1.47
VPS4A-203ENST00000564399 IGKV1D-17A0A075B6S4 117 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 TVP23AA6NH52 213 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 FAM90A8PA6NJQ4 464 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 ANXA2P07355 339 aaKnown RBP5.87□□□□□ -1.47
VPS4A-203ENST00000564399 LYL1P12980 280 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 HIST1H1CP16403 213 aaKnown RBP5.87□□□□□ -1.47
VPS4A-203ENST00000564399 CCL3L1P16619 93 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 OTX1P32242 354 aaPredicted RBP5.87□□□□□ -1.47
VPS4A-203ENST00000564399 PYCR1P32322 319 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 OR12D2P58182 307 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 FXYD6P3P58550 94 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 MXRA7P84157 204 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 FAM3AP98173 230 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 DYNC1I2Q13409 638 aaKnown RBP5.87□□□□□ -1.47
VPS4A-203ENST00000564399 GFOD2Q3B7J2 385 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 IFI44LQ53G44 452 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 FGD3Q5JSP0 725 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 NKAPLQ5M9Q1 402 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 TMEM200BQ69YZ2 307 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 WDR93Q6P2C0 686 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 KCTD18Q6PI47 426 aaPredicted RBP5.87□□□□□ -1.47
VPS4A-203ENST00000564399 SMARCD3Q6STE5 483 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 MEPCEQ7L2J0 689 aaKnown RBP5.87□□□□□ -1.47
VPS4A-203ENST00000564399 DCXRQ7Z4W1 244 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 ZBTB46Q86UZ6 589 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 ZDHHC21Q8IVQ6 265 aa5.87□□□□□ -1.47
VPS4A-203ENST00000564399 FTMTQ8N4E7 242 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms