RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 LYZL4Q96KX0 146 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 TECTBQ96PL2 329 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 ABHD1Q96SE0 405 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 GPER1Q99527 375 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 S100A13Q99584 98 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 ATG5Q9H1Y0 275 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 GHRLQ9UBU3 117 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 CGGBP1Q9UFW8 167 aaPredicted RBP7.75□□□□□ -1.17
VPS39-207ENST00000563692 KCNN3Q9UGI6 736 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 MED12Q93074 2177 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 ITPR2Q14571 2701 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 KIAA1549Q9HCM3 1950 aa7.75□□□□□ -1.17
VPS39-207ENST00000563692 LINC00854A0A1B0GVQ3 168 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 C5orf49A4QMS7 147 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 MBD3L4A6NDZ8 208 aaPredicted RBP7.74□□□□□ -1.17
VPS39-207ENST00000563692 MBD3L3A6NE82 208 aaPredicted RBP7.74□□□□□ -1.17
VPS39-207ENST00000563692 MBD3L5A6NJ08 208 aaPredicted RBP7.74□□□□□ -1.17
VPS39-207ENST00000563692 GABARAPH6UMI1 98 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 EEF1E1O43324 174 aaKnown RBP7.74□□□□□ -1.17
VPS39-207ENST00000563692 IL18BPO95998 194 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 BMP5P22003 454 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 TIMP3P35625 211 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 KIR2DL2P43627 348 aaPredicted RBP7.74□□□□□ -1.17
VPS39-207ENST00000563692 AP3S2P59780 193 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 TFF3Q07654 80 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 P2RY6Q15077 328 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 CNN3Q15417 329 aaKnown RBP7.74□□□□□ -1.17
VPS39-207ENST00000563692 GUSBP1Q15486 140 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 SNAI3Q3KNW1 292 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 TBRG1Q3YBR2 411 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 SFRP5Q5T4F7 317 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 ZBTB37Q5TC79 503 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 RAB12Q6IQ22 244 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 CCBE1Q6UXH8 406 aaPredicted RBP7.74□□□□□ -1.17
VPS39-207ENST00000563692 UNQ6126/PRO20091Q6UXV3 157 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 COLCA1Q6ZS62 124 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 BEND4Q6ZU67 534 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 TMEM200AQ86VY9 491 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 ZNF295-AS1Q8N0V1 137 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 GCNT2Q8N0V5 402 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 FTMTQ8N4E7 242 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 TOMM5Q8N4H5 51 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 C1orf162Q8NEQ5 155 aaPredicted RBP7.74□□□□□ -1.17
VPS39-207ENST00000563692 MBD3L2Q8NHZ7 208 aaPredicted RBP7.74□□□□□ -1.17
VPS39-207ENST00000563692 ENKURQ8TC29 256 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 PPP1R14BQ96C90 147 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 C7orf50Q9BRJ6 194 aaKnown RBP7.74□□□□□ -1.17
VPS39-207ENST00000563692 OPA3Q9H6K4 179 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 CNTD2Q9H8S5 307 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 NPDC1Q9NQX5 325 aaPredicted RBP7.74□□□□□ -1.17
VPS39-207ENST00000563692 ZNF224Q9NZL3 707 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 EIF3KQ9UBQ5 218 aaKnown RBP7.74□□□□□ -1.17
VPS39-207ENST00000563692 ZNF629Q9UEG4 869 aaPredicted RBP7.74□□□□□ -1.17
VPS39-207ENST00000563692 SLC7A11Q9UPY5 501 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 ABCA12Q86UK0 2595 aa7.74□□□□□ -1.17
VPS39-207ENST00000563692 INTS1Q8N201 2190 aaKnown RBP7.73□□□□□ -1.17
VPS39-207ENST00000563692 CRYBG3Q68DQ2 2970 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 LOC100509620A0A075B734 347 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 TMEM272A0A1B0GTI8 110 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 FAM240BA0A1B0GVZ2 78 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 EEF1E1-BLOC1S5C9J1V9 151 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 LYRM1O43325 122 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 CTAG2O75638 210 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 CHRM2P08172 466 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 TMIGD3P0DMS9 266 aaPredicted RBP7.73□□□□□ -1.17
VPS39-207ENST00000563692 IGFBP2P18065 325 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 IGHV1-2P23083 117 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 CDK2P24941 298 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 OPRM1P35372 400 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 KIR2DL3P43628 341 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 GSK3AP49840 483 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 ASCL1P50553 236 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 FOXG1P55316 489 aaPredicted RBP7.73□□□□□ -1.17
VPS39-207ENST00000563692 TAS2R20P59543 309 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 GABRA6Q16445 453 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 TBC1D28Q2M2D7 210 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 HIKESHIQ53FT3 197 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 CLVS2Q5SYC1 327 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 AWAT2Q6E213 333 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 MRPL21Q7Z2W9 205 aaKnown RBP7.73□□□□□ -1.17
VPS39-207ENST00000563692 OR2W3Q7Z3T1 314 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 CDH24Q86UP0 819 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 LYPD6Q86Y78 171 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 ZNF101Q8IZC7 436 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 C17orf78Q8N4C9 275 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 ACBD4Q8NC06 268 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 KCNG3Q8TAE7 436 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 SMIM4Q8WVI0 70 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 FAM46BQ96A09 425 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 SPSB4Q96A44 273 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 SPSB1Q96BD6 273 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 SLC25A38Q96DW6 304 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 BOD1Q96IK1 185 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 POM121L2Q96KW2 1035 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 SOX7Q9BT81 388 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 CHST5Q9GZS9 411 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 MOV10Q9HCE1 1003 aaKnown RBP7.73□□□□□ -1.17
VPS39-207ENST00000563692 OBP2BQ9NPH6 170 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 PCDHB16Q9NRJ7 776 aa7.73□□□□□ -1.17
VPS39-207ENST00000563692 RBFOX1Q9NWB1 397 aaKnown RBP7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms