RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 HIST1H2BBP33778 126 aa5.65□□□□□ -1.5
CLK3-212ENST00000563418 TDGF1P3P51864 188 aa5.65□□□□□ -1.5
CLK3-212ENST00000563418 HIST1H2BDP58876 126 aa5.65□□□□□ -1.5
CLK3-212ENST00000563418 HIST1H2BCP62807 126 aa5.65□□□□□ -1.5
CLK3-212ENST00000563418 HIST2H2BEQ16778 126 aa5.65□□□□□ -1.5
CLK3-212ENST00000563418 PSMG4Q5JS54 123 aa5.65□□□□□ -1.5
CLK3-212ENST00000563418 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.65□□□□□ -1.5
CLK3-212ENST00000563418 PIANPQ8IYJ0 282 aa5.65□□□□□ -1.5
CLK3-212ENST00000563418 TMEM251Q8N6I4 163 aa5.65□□□□□ -1.5
CLK3-212ENST00000563418 OR2Y1Q8NGV0 311 aa5.65□□□□□ -1.5
CLK3-212ENST00000563418 HIST1H2BHQ93079 126 aa5.65□□□□□ -1.5
CLK3-212ENST00000563418 HIST1H2BNQ99877 126 aa5.65□□□□□ -1.5
CLK3-212ENST00000563418 HIST1H2BMQ99879 126 aa5.65□□□□□ -1.5
CLK3-212ENST00000563418 PSMG3Q9BT73 122 aaPredicted RBP5.65□□□□□ -1.5
CLK3-212ENST00000563418 LOC102724200A0A096LPH7 203 aaPredicted RBP5.65□□□□□ -1.51
CLK3-212ENST00000563418 TRBV5-3A0A0A0MS03 114 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 A8MWP6 167 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 SQSTM1Q13501 440 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 C1orf194Q5T5A4 169 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 MRPL2Q5T653 305 aaKnown RBP5.65□□□□□ -1.51
CLK3-212ENST00000563418 MRPL54Q6P161 138 aaKnown RBP5.65□□□□□ -1.51
CLK3-212ENST00000563418 PLXDC2Q6UX71 529 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 SLC39A5Q6ZMH5 540 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 TAS1R1Q7RTX1 841 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 SVIPQ8NHG7 77 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 HAPLN2Q9GZV7 340 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 CXCL11O14625 94 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 EOGTQ5NDL2 527 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 DACT2Q5SW24 774 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 HIST3H2BBQ8N257 126 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 C2orf73Q8N5S3 287 aaPredicted RBP5.65□□□□□ -1.51
CLK3-212ENST00000563418 CYB561D1Q8N8Q1 229 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 RNASEH2CQ8TDP1 164 aaKnown RBP5.65□□□□□ -1.51
CLK3-212ENST00000563418 DDIT4LQ96D03 193 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 CHST6Q9GZX3 395 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 OR1A1Q9P1Q5 309 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 LAMTOR2Q9Y2Q5 125 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 S100A7P31151 101 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 CDKN1CP49918 316 aaPredicted RBP5.65□□□□□ -1.51
CLK3-212ENST00000563418 H2BFSP57053 126 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 ABHD14BQ96IU4 210 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 HSPB9Q9BQS6 159 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 TMEM204Q9BSN7 226 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 CISD1Q9NZ45 108 aaKnown RBP5.65□□□□□ -1.51
CLK3-212ENST00000563418 ZNF774Q6NX45 483 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 VASH2Q86V25 355 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 PNKDQ8N490 385 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 CHST14Q8NCH0 376 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 MAGT1Q9H0U3 335 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 SMG9Q9H0W8 520 aaKnown RBP5.65□□□□□ -1.51
CLK3-212ENST00000563418 ELOVL2Q9NXB9 296 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 GPR34Q9UPC5 381 aa5.65□□□□□ -1.51
CLK3-212ENST00000563418 K7EQM0 130 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 FRS3O43559 492 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 TBX18O95935 607 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 CYC1P08574 325 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 ADRA2AP08913 450 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 CD1BP29016 333 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 MEF2AQ02078 507 aaPredicted RBP5.64□□□□□ -1.51
CLK3-212ENST00000563418 TRNP1Q6NT89 227 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 GLIPR1L1Q6UWM5 242 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 ERASQ7Z444 233 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 RTN4IP1Q8WWV3 396 aaPredicted RBP5.64□□□□□ -1.51
CLK3-212ENST00000563418 SFRP2Q96HF1 295 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 GPR84Q9NQS5 396 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 TRAV9-1A0A075B6T8 112 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 A0A0D9SEW6 157 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 GPM6AP51674 278 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 ANKRD39Q53RE8 183 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 LDLRAD2Q5SZI1 272 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 RNASEKQ6P5S7 137 aaKnown RBP5.64□□□□□ -1.51
CLK3-212ENST00000563418 CLEC2AQ6UVW9 174 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 C16orf82Q7Z2V1 217 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 KLHDC8AQ8IYD2 350 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 OR2C3Q8N628 320 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 ZNRF4Q8WWF5 429 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 ARRDC3Q96B67 414 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 IGSF21Q96ID5 467 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 SERINC2Q96SA4 455 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 UBTD1Q9HAC8 227 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 TNFSF12-TNFSF13A0A0A6YY99 330 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 FGF16O43320 207 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 TNFSF12O43508 249 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 SNAI3Q3KNW1 292 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 OR5C1Q8NGR4 320 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 NMNAT3Q96T66 252 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 FITM1A5D6W6 292 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 RAB29O14966 203 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 LIPFP07098 398 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 CSNK1DP48730 415 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 ASCL1P50553 236 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 C22orf39Q6P5X5 142 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 HEPN1Q6WQI6 88 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 HIST1H2BLQ99880 126 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 GDF15Q99988 308 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 OGG1O15527 345 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 ZNF264O43296 627 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 HOXC4P09017 264 aaPredicted RBP5.64□□□□□ -1.51
CLK3-212ENST00000563418 PPICP45877 212 aa5.64□□□□□ -1.51
CLK3-212ENST00000563418 EXT1Q16394 746 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms