RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 FGF23Q9GZV9 251 aaPredicted RBP13.4□□□□□ -0.26
CLN3-208ENST00000561505 WDR13Q9H1Z4 485 aa13.4□□□□□ -0.26
CLN3-208ENST00000561505 RGCCQ9H4X1 137 aa13.4□□□□□ -0.26
CLN3-208ENST00000561505 RANBP3Q9H6Z4 567 aaPredicted RBP13.4□□□□□ -0.26
CLN3-208ENST00000561505 BAIAP2Q9UQB8 552 aa13.4□□□□□ -0.26
CLN3-208ENST00000561505 TET2Q6N021 2002 aaPredicted RBP13.4□□□□□ -0.26
CLN3-208ENST00000561505 PLXNB1O43157 2135 aa13.39□□□□□ -0.27
CLN3-208ENST00000561505 MEIOCA2RUB1 952 aa13.39□□□□□ -0.27
CLN3-208ENST00000561505 TMEM210A6NLX4 147 aa13.39□□□□□ -0.27
CLN3-208ENST00000561505 GASTP01350 101 aa13.39□□□□□ -0.27
CLN3-208ENST00000561505 GABRA5P31644 462 aa13.39□□□□□ -0.27
CLN3-208ENST00000561505 OPRL1P41146 370 aa13.39□□□□□ -0.27
CLN3-208ENST00000561505 DLX1P56177 255 aa13.39□□□□□ -0.27
CLN3-208ENST00000561505 TAF13Q15543 124 aa13.39□□□□□ -0.27
CLN3-208ENST00000561505 REC114Q7Z4M0 266 aa13.39□□□□□ -0.27
CLN3-208ENST00000561505 OR5T2Q8NGG2 359 aa13.39□□□□□ -0.27
CLN3-208ENST00000561505 OR5P3Q8WZ94 311 aa13.39□□□□□ -0.27
CLN3-208ENST00000561505 ITFG2Q969R8 447 aa13.39□□□□□ -0.27
CLN3-208ENST00000561505 MCUR1Q96AQ8 359 aa13.39□□□□□ -0.27
CLN3-208ENST00000561505 ABCB9Q9NP78 766 aa13.39□□□□□ -0.27
CLN3-208ENST00000561505 DNAH3Q8TD57 4116 aa13.39□□□□□ -0.27
CLN3-208ENST00000561505 GYPBP06028 91 aa13.38□□□□□ -0.27
CLN3-208ENST00000561505 CLUP10909 449 aa13.38□□□□□ -0.27
CLN3-208ENST00000561505 ACKR3P25106 362 aa13.38□□□□□ -0.27
CLN3-208ENST00000561505 ZNF121P58317 390 aaPredicted RBP13.38□□□□□ -0.27
CLN3-208ENST00000561505 PRB3Q04118 309 aaPredicted RBP13.38□□□□□ -0.27
CLN3-208ENST00000561505 IKZF1Q13422 519 aa13.38□□□□□ -0.27
CLN3-208ENST00000561505 TIGD6Q17RP2 521 aa13.38□□□□□ -0.27
CLN3-208ENST00000561505 SPATS1Q496A3 300 aa13.38□□□□□ -0.27
CLN3-208ENST00000561505 PNKDQ8N490 385 aa13.38□□□□□ -0.27
CLN3-208ENST00000561505 OR9Q2Q8NGE9 314 aa13.38□□□□□ -0.27
CLN3-208ENST00000561505 OR4Q3Q8NH05 313 aa13.38□□□□□ -0.27
CLN3-208ENST00000561505 PIFOQ8TCI5 191 aa13.38□□□□□ -0.27
CLN3-208ENST00000561505 NSMCE2Q96MF7 247 aa13.38□□□□□ -0.27
CLN3-208ENST00000561505 MICU1Q9BPX6 476 aa13.38□□□□□ -0.27
CLN3-208ENST00000561505 PPA2Q9H2U2 334 aa13.38□□□□□ -0.27
CLN3-208ENST00000561505 SLC25A10Q9UBX3 287 aaPredicted RBP13.38□□□□□ -0.27
CLN3-208ENST00000561505 ZNF222Q9UK12 451 aa13.38□□□□□ -0.27
CLN3-208ENST00000561505 V9GYQ6 96 aa13.38□□□□□ -0.27
CLN3-208ENST00000561505 TRBV23-1A0A0A0MS06 115 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 ARPC2O15144 300 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 TBX1O43435 398 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 HIST2H2BDQ6DRA6 164 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 CD300LDQ6UXZ3 194 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 Q6ZTK2 550 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 FAM57BQ71RH2 274 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 TIGD4Q8IY51 512 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 FTMTQ8N4E7 242 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 C11orf42Q8N5U0 333 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 OR5D13Q8NGL4 314 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 WIPF2Q8TF74 440 aaPredicted RBP13.37□□□□□ -0.27
CLN3-208ENST00000561505 C17orf50Q8WW18 174 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 HPSE2Q8WWQ2 592 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 PPP1R14AQ96A00 147 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 AMELYQ99218 206 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 RTL8AQ9BWD3 113 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 PAPOLGQ9BWT3 736 aaKnown RBP13.37□□□□□ -0.27
CLN3-208ENST00000561505 TSSK6Q9BXA6 273 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 DGCR6LQ9BY27 220 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 FAM234AQ9H0X4 552 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 OR10A2Q9H208 303 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 CMC2Q9NRP2 79 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 SIGLEC9Q9Y336 463 aa13.37□□□□□ -0.27
CLN3-208ENST00000561505 SF3B6Q9Y3B4 125 aaKnown RBP13.37□□□□□ -0.27
CLN3-208ENST00000561505 IGKV1D-17A0A075B6S4 117 aa13.36□□□□□ -0.27
CLN3-208ENST00000561505 ANKRD61A6NGH8 418 aa13.36□□□□□ -0.27
CLN3-208ENST00000561505 ANXA2P2A6NMY6 339 aa13.36□□□□□ -0.27
CLN3-208ENST00000561505 H3BUX3 64 aa13.36□□□□□ -0.27
CLN3-208ENST00000561505 PAHP00439 452 aa13.36□□□□□ -0.27
CLN3-208ENST00000561505 ANXA2P07355 339 aaKnown RBP13.36□□□□□ -0.27
CLN3-208ENST00000561505 GNALP38405 381 aa13.36□□□□□ -0.27
CLN3-208ENST00000561505 EIF2B1Q14232 305 aaKnown RBP13.36□□□□□ -0.27
CLN3-208ENST00000561505 SAMD4BQ5PRF9 694 aaKnown RBP13.36□□□□□ -0.27
CLN3-208ENST00000561505 SHFQ7M4L6 423 aa13.36□□□□□ -0.27
CLN3-208ENST00000561505 PGAM4Q8N0Y7 254 aa13.36□□□□□ -0.27
CLN3-208ENST00000561505 Q8N2B8 174 aa13.36□□□□□ -0.27
CLN3-208ENST00000561505 DTX3Q8N9I9 347 aa13.36□□□□□ -0.27
CLN3-208ENST00000561505 OR2T33Q8NG76 320 aa13.36□□□□□ -0.27
CLN3-208ENST00000561505 RPL3LQ92901 407 aaKnown RBP13.36□□□□□ -0.27
CLN3-208ENST00000561505 DUS3LQ96G46 650 aaKnown RBP13.36□□□□□ -0.27
CLN3-208ENST00000561505 SDSLQ96GA7 329 aa13.36□□□□□ -0.27
CLN3-208ENST00000561505 SSX3Q99909 188 aa13.36□□□□□ -0.27
CLN3-208ENST00000561505 NLKQ9UBE8 527 aa13.36□□□□□ -0.27
CLN3-208ENST00000561505 ZNF391Q9UJN7 358 aa13.36□□□□□ -0.27
CLN3-208ENST00000561505 N6AMT1Q9Y5N5 214 aa13.36□□□□□ -0.27
CLN3-208ENST00000561505 A0A1W2PRD5 423 aa13.35□□□□□ -0.27
CLN3-208ENST00000561505 A0A1W2PRF3 423 aa13.35□□□□□ -0.27
CLN3-208ENST00000561505 A0A1W2PRM7 423 aa13.35□□□□□ -0.27
CLN3-208ENST00000561505 OR2AT4A6NND4 320 aa13.35□□□□□ -0.27
CLN3-208ENST00000561505 TNFRSF11BO00300 401 aa13.35□□□□□ -0.27
CLN3-208ENST00000561505 AKR7A2O43488 359 aa13.35□□□□□ -0.27
CLN3-208ENST00000561505 HSD11B1P28845 292 aa13.35□□□□□ -0.27
CLN3-208ENST00000561505 MSX2P35548 267 aaPredicted RBP13.35□□□□□ -0.27
CLN3-208ENST00000561505 PRDX4Q13162 271 aa13.35□□□□□ -0.27
CLN3-208ENST00000561505 LIAT1Q6ZQX7 453 aa13.35□□□□□ -0.27
CLN3-208ENST00000561505 OR5K1Q8NHB7 308 aa13.35□□□□□ -0.27
CLN3-208ENST00000561505 H1FXQ92522 213 aaKnown RBP13.35□□□□□ -0.27
CLN3-208ENST00000561505 LYZL4Q96KX0 146 aa13.35□□□□□ -0.27
CLN3-208ENST00000561505 INTS14Q96SY0 518 aa13.35□□□□□ -0.27
CLN3-208ENST00000561505 RAB18Q9NP72 206 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms