RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 IGHV4-30-2A0A087WSY4 118 aa18.41■□□□□ 0.54
SNX1-210ENST00000560260 IGHV1-69-2A0A0G2JMI3 117 aa18.41■□□□□ 0.54
SNX1-210ENST00000560260 PTBP3O95758 552 aaKnown RBP18.41■□□□□ 0.54
SNX1-210ENST00000560260 THBS2P35442 1172 aa18.41■□□□□ 0.54
SNX1-210ENST00000560260 GNALP38405 381 aa18.41■□□□□ 0.54
SNX1-210ENST00000560260 PMELP40967 661 aa18.41■□□□□ 0.54
SNX1-210ENST00000560260 CRYBB2P43320 205 aa18.41■□□□□ 0.54
SNX1-210ENST00000560260 TAS2R43P59537 309 aa18.41■□□□□ 0.54
SNX1-210ENST00000560260 MED22Q15528 200 aa18.41■□□□□ 0.54
SNX1-210ENST00000560260 CARTPTQ16568 116 aa18.41■□□□□ 0.54
SNX1-210ENST00000560260 KCTD21Q4G0X4 260 aa18.41■□□□□ 0.54
SNX1-210ENST00000560260 CEP78Q5JTW2 689 aa18.41■□□□□ 0.54
SNX1-210ENST00000560260 FTMTQ8N4E7 242 aa18.41■□□□□ 0.54
SNX1-210ENST00000560260 CCDC54Q8NEL0 328 aa18.41■□□□□ 0.54
SNX1-210ENST00000560260 C10orf105Q8TEF2 133 aa18.41■□□□□ 0.54
SNX1-210ENST00000560260 OR5P3Q8WZ94 311 aa18.41■□□□□ 0.54
SNX1-210ENST00000560260 COMMD4Q9H0A8 199 aa18.41■□□□□ 0.54
SNX1-210ENST00000560260 NOP16Q9Y3C1 178 aaKnown RBP18.41■□□□□ 0.54
SNX1-210ENST00000560260 ZNF469Q96JG9 3925 aaPredicted RBP18.41■□□□□ 0.54
SNX1-210ENST00000560260 TRIM64BA6NI03 449 aa18.4■□□□□ 0.54
SNX1-210ENST00000560260 SRP9P49458 86 aaKnown RBP18.4■□□□□ 0.54
SNX1-210ENST00000560260 PDLIM4P50479 330 aa18.4■□□□□ 0.54
SNX1-210ENST00000560260 RPS11P62280 158 aaKnown RBP eCLIP18.4■□□□□ 0.54
SNX1-210ENST00000560260 MRPS11P82912 194 aaKnown RBP18.4■□□□□ 0.54
SNX1-210ENST00000560260 BDH1Q02338 343 aa18.4■□□□□ 0.54
SNX1-210ENST00000560260 MPPED2Q15777 294 aa18.4■□□□□ 0.54
SNX1-210ENST00000560260 CLEC2AQ6UVW9 174 aa18.4■□□□□ 0.54
SNX1-210ENST00000560260 MOGAT3Q86VF5 341 aa18.4■□□□□ 0.54
SNX1-210ENST00000560260 SPARTQ8N0X7 666 aa18.4■□□□□ 0.54
SNX1-210ENST00000560260 OR8S1Q8NH09 359 aa18.4■□□□□ 0.54
SNX1-210ENST00000560260 ZNF420Q8TAQ5 688 aaPredicted RBP18.4■□□□□ 0.54
SNX1-210ENST00000560260 GHSRQ92847 366 aa18.4■□□□□ 0.54
SNX1-210ENST00000560260 PLEKHA1Q9HB21 404 aa18.4■□□□□ 0.54
SNX1-210ENST00000560260 GCM1Q9NP62 436 aa18.4■□□□□ 0.54
SNX1-210ENST00000560260 MYOZ1Q9NP98 299 aaPredicted RBP18.4■□□□□ 0.54
SNX1-210ENST00000560260 ACOT13Q9NPJ3 140 aa18.4■□□□□ 0.54
SNX1-210ENST00000560260 ZNF275Q9NSD4 429 aaPredicted RBP18.4■□□□□ 0.54
SNX1-210ENST00000560260 CELSR1Q9NYQ6 3014 aa18.4■□□□□ 0.54
SNX1-210ENST00000560260 ITPR3Q14573 2671 aa18.39■□□□□ 0.53
SNX1-210ENST00000560260 MRPS14O60783 128 aaKnown RBP18.39■□□□□ 0.53
SNX1-210ENST00000560260 CELP19835 753 aa18.39■□□□□ 0.53
SNX1-210ENST00000560260 PCMT1P22061 227 aa18.39■□□□□ 0.53
SNX1-210ENST00000560260 GATA4P43694 442 aa18.39■□□□□ 0.53
SNX1-210ENST00000560260 CHN2P52757 468 aa18.39■□□□□ 0.53
SNX1-210ENST00000560260 EMX1Q04741 257 aaPredicted RBP18.39■□□□□ 0.53
SNX1-210ENST00000560260 RIN1Q13671 783 aa18.39■□□□□ 0.53
SNX1-210ENST00000560260 CLVS2Q5SYC1 327 aa18.39■□□□□ 0.53
SNX1-210ENST00000560260 ZNF773Q6PK81 442 aa18.39■□□□□ 0.53
SNX1-210ENST00000560260 MOB3CQ70IA8 216 aa18.39■□□□□ 0.53
SNX1-210ENST00000560260 CELF2-AS1Q8N7Q2 184 aa18.39■□□□□ 0.53
SNX1-210ENST00000560260 OR13C3Q8NGS6 347 aa18.39■□□□□ 0.53
SNX1-210ENST00000560260 FAM168AQ92567 244 aa18.39■□□□□ 0.53
SNX1-210ENST00000560260 FGGYQ96C11 551 aa18.39■□□□□ 0.53
SNX1-210ENST00000560260 OPALINQ96PE5 141 aa18.39■□□□□ 0.53
SNX1-210ENST00000560260 CHST5Q9GZS9 411 aa18.39■□□□□ 0.53
SNX1-210ENST00000560260 ZNF281Q9Y2X9 895 aa18.39■□□□□ 0.53
SNX1-210ENST00000560260 DYSFO75923 2080 aa18.38■□□□□ 0.53
SNX1-210ENST00000560260 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP18.38■□□□□ 0.53
SNX1-210ENST00000560260 ANXA2P2A6NMY6 339 aa18.38■□□□□ 0.53
SNX1-210ENST00000560260 PLPP2O43688 288 aa18.38■□□□□ 0.53
SNX1-210ENST00000560260 NRASP01111 189 aa18.38■□□□□ 0.53
SNX1-210ENST00000560260 CSF3P09919 207 aa18.38■□□□□ 0.53
SNX1-210ENST00000560260 ZNF12P17014 697 aa18.38■□□□□ 0.53
SNX1-210ENST00000560260 TNFRSF1AP19438 455 aa18.38■□□□□ 0.53
SNX1-210ENST00000560260 HOXA4Q00056 320 aaPredicted RBP18.38■□□□□ 0.53
SNX1-210ENST00000560260 UBE2V2Q15819 145 aa18.38■□□□□ 0.53
SNX1-210ENST00000560260 PLCXD3Q63HM9 321 aa18.38■□□□□ 0.53
SNX1-210ENST00000560260 ASPHD2Q6ICH7 369 aa18.38■□□□□ 0.53
SNX1-210ENST00000560260 SPERTQ8NA61 448 aa18.38■□□□□ 0.53
SNX1-210ENST00000560260 CHODLQ9H9P2 273 aa18.38■□□□□ 0.53
SNX1-210ENST00000560260 ABCB9Q9NP78 766 aa18.38■□□□□ 0.53
SNX1-210ENST00000560260 UFSP2Q9NUQ7 469 aa18.38■□□□□ 0.53
SNX1-210ENST00000560260 A0A096LNT2 108 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 TRBV5-5A0A0J9YX44 114 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 ANKRD61A6NGH8 418 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 VWC2LB2RUY7 222 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 CD1AP06126 327 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 GRPP07492 148 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 SOX2P48431 317 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 ZNF154Q13106 437 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 CEACAM21Q3KPI0 293 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 ZNF367Q7RTV3 350 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 C11orf53Q8IXP5 236 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 OR1M1Q8NGA1 313 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 GPR148Q8TDV2 347 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 TSEN15Q8WW01 171 aaKnown RBP18.37■□□□□ 0.53
SNX1-210ENST00000560260 CCL17Q92583 94 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 C10orf35Q96D05 121 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 MICU1Q9BPX6 476 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 RTL8AQ9BWD3 113 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 BPESC1Q9GZL8 116 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 DHDHQ9UQ10 334 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 PPP1R3CQ9UQK1 317 aa18.37■□□□□ 0.53
SNX1-210ENST00000560260 IGKV1-9A0A0C4DH69 117 aa18.36■□□□□ 0.53
SNX1-210ENST00000560260 ZNF20P17024 532 aa18.36■□□□□ 0.53
SNX1-210ENST00000560260 GIFP27352 417 aa18.36■□□□□ 0.53
SNX1-210ENST00000560260 GPM6AP51674 278 aa18.36■□□□□ 0.53
SNX1-210ENST00000560260 DSCR9P59020 149 aa18.36■□□□□ 0.53
SNX1-210ENST00000560260 MLLT11Q13015 90 aaPredicted RBP18.36■□□□□ 0.53
SNX1-210ENST00000560260 ZNF826PQ6ZT77 177 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms