RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-233	ENST00000557529	UNC119	Q13432	240 aa		10.78	□□□□□ -0.68
SHMT2-233	ENST00000557529	DYRK1A	Q13627	763 aa		10.78	□□□□□ -0.68
SHMT2-233	ENST00000557529	RNASE12	Q5GAN4	147 aa	Known RBP	10.78	□□□□□ -0.68
SHMT2-233	ENST00000557529	DNM1P46	Q6ZS02	220 aa		10.78	□□□□□ -0.68
SHMT2-233	ENST00000557529	CDH24	Q86UP0	819 aa		10.78	□□□□□ -0.68
SHMT2-233	ENST00000557529	RPRML	Q8N4K4	120 aa		10.78	□□□□□ -0.68
SHMT2-233	ENST00000557529	FAM169B	Q8N8A8	192 aa		10.78	□□□□□ -0.68
SHMT2-233	ENST00000557529	OR52I2	Q8NH67	350 aa		10.78	□□□□□ -0.68
SHMT2-233	ENST00000557529	UBASH3B	Q8TF42	649 aa		10.78	□□□□□ -0.68
SHMT2-233	ENST00000557529	NPRL2	Q8WTW4	380 aa		10.78	□□□□□ -0.68
SHMT2-233	ENST00000557529	TNFAIP8L1	Q8WVP5	186 aa		10.78	□□□□□ -0.68
SHMT2-233	ENST00000557529	BORCS8	Q96FH0	119 aa		10.78	□□□□□ -0.68
SHMT2-233	ENST00000557529	SCPEP1	Q9HB40	452 aa		10.78	□□□□□ -0.68
SHMT2-233	ENST00000557529	ASF1B	Q9NVP2	202 aa		10.78	□□□□□ -0.68
SHMT2-233	ENST00000557529	RBMX2	Q9Y388	322 aa	Known RBP	10.78	□□□□□ -0.68
SHMT2-233	ENST00000557529	CACNG2	Q9Y698	323 aa		10.78	□□□□□ -0.68
SHMT2-233	ENST00000557529	RTTN	Q86VV8	2226 aa		10.78	□□□□□ -0.68
SHMT2-233	ENST00000557529	SVIL	O95425	2214 aa		10.78	□□□□□ -0.68
SHMT2-233	ENST00000557529	FAM240B	A0A1B0GVZ2	78 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529		A0A1W2PR80	420 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	FUOM	A2VDF0	154 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	OR5H1	A6NKK0	313 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	SULT1C2	O00338	296 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	MSTN	O14793	375 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	ORC5	O43913	435 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	CST4	P01036	141 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	NGF	P01138	241 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	IGKV3-15	P01624	115 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	CHRM2	P08172	466 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	IL32	P24001	234 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	PRSS3	P35030	304 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	RBP2	P50120	134 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	BCAP31	P51572	246 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	TSC22D1	Q15714	1073 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	PLCXD3	Q63HM9	321 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	OR10K2	Q6IF99	312 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	UNQ6126/PRO20091	Q6UXV3	157 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	C3P1	Q6ZMU1	363 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	MOB3C	Q70IA8	216 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	BIVM	Q86UB2	503 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	PAQR4	Q8N4S7	273 aa	Predicted RBP	10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	OR56B2P	Q8NGI1	322 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	DEDD2	Q8WXF8	326 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	PIGC	Q92535	297 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	FAM122A	Q96E09	287 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	C1orf147	Q96MC9	270 aa	Predicted RBP	10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	URM1	Q9BTM9	101 aa	Known RBP	10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	AUNIP	Q9H7T9	357 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	TAS2R8	Q9NYW2	309 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	MYEF2	Q9P2K5	600 aa	Known RBP	10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	ING4	Q9UNL4	249 aa		10.77	□□□□□ -0.68
SHMT2-233	ENST00000557529	IGF2R	P11717	2491 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	FAM230A	A0A1W2PPH8	454 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	TMEM8B	A6NDV4	472 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	NAP1L6	A6NFF2	107 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529		H7C417	338 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	SSX4	O60224	188 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	CDC14B	O60729	498 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	RBBP9	O75884	186 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	MPIG6B	O95866	241 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	CELA3B	P08861	270 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	SFTPC	P11686	197 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	PSMB1	P20618	241 aa	Known RBP	10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	TUBG1	P23258	451 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	KLF9	Q13886	244 aa	Predicted RBP	10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	GPR176	Q14439	515 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	HLX	Q14774	488 aa	Predicted RBP	10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	PRR30	Q53SZ7	412 aa	Predicted RBP	10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	CRIP3	Q6Q6R5	217 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	ZNF474	Q6S9Z5	364 aa	Predicted RBP	10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	PLET1	Q6UQ28	207 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	RFPL4B	Q6ZWI9	263 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	RNF144B	Q7Z419	303 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	DUSP18	Q8NEJ0	188 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	STEAP2	Q8NFT2	490 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	NEDD4L	Q96PU5	975 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	PAPOLG	Q9BWT3	736 aa	Known RBP	10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	TMEM59	Q9BXS4	323 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	TUBG2	Q9NRH3	451 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	MTFP1	Q9UDX5	166 aa		10.77	□□□□□ -0.69
SHMT2-233	ENST00000557529	ANKRD30BL	A7E2S9	258 aa		10.76	□□□□□ -0.69
SHMT2-233	ENST00000557529	CD300LB	A8K4G0	201 aa		10.76	□□□□□ -0.69
SHMT2-233	ENST00000557529	ZNF850	A8MQ14	1090 aa		10.76	□□□□□ -0.69
SHMT2-233	ENST00000557529	RAB27B	O00194	218 aa		10.76	□□□□□ -0.69
SHMT2-233	ENST00000557529	SMPD2	O60906	423 aa		10.76	□□□□□ -0.69
SHMT2-233	ENST00000557529	ZNF780A	O75290	641 aa	Predicted RBP	10.76	□□□□□ -0.69
SHMT2-233	ENST00000557529	CRTAP	O75718	401 aa	Predicted RBP	10.76	□□□□□ -0.69
SHMT2-233	ENST00000557529	IGLV1-44	P01699	117 aa		10.76	□□□□□ -0.69
SHMT2-233	ENST00000557529	LPL	P06858	475 aa		10.76	□□□□□ -0.69
SHMT2-233	ENST00000557529	TMEM225B	P0DP42	221 aa		10.76	□□□□□ -0.69
SHMT2-233	ENST00000557529	SLC6A1	P30531	599 aa		10.76	□□□□□ -0.69
SHMT2-233	ENST00000557529	KIR2DL3	P43628	341 aa		10.76	□□□□□ -0.69
SHMT2-233	ENST00000557529	SRP9	P49458	86 aa	Known RBP	10.76	□□□□□ -0.69
SHMT2-233	ENST00000557529	PRSS12	P56730	875 aa		10.76	□□□□□ -0.69
SHMT2-233	ENST00000557529	ACTB	P60709	375 aa		10.76	□□□□□ -0.69
SHMT2-233	ENST00000557529	ZP1	P60852	638 aa		10.76	□□□□□ -0.69
SHMT2-233	ENST00000557529	PPP1CB	P62140	327 aa		10.76	□□□□□ -0.69
SHMT2-233	ENST00000557529	RPS27A	P62979	156 aa	Known RBP	10.76	□□□□□ -0.69
SHMT2-233	ENST00000557529	ACTG1	P63261	375 aa		10.76	□□□□□ -0.69
SHMT2-233	ENST00000557529	PRDX4	Q13162	271 aa		10.76	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms