RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 NRASP01111 189 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 RPSAP08865 295 aaKnown RBP10.86□□□□□ -0.67
SHMT2-227ENST00000557269 ZNF12P17014 697 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 COL8A2P25067 703 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 PSMB9P28065 219 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 GNALP38405 381 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 EFNA4P52798 201 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 ATP5J2P56134 94 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 GPR50Q13585 617 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 PCGF3Q3KNV8 242 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 YIF1BQ5BJH7 314 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 ZMAT1Q5H9K5 638 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 CLVS2Q5SYC1 327 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 SYT6Q5T7P8 510 aaPredicted RBP10.86□□□□□ -0.67
SHMT2-227ENST00000557269 PRAMEF6Q5VXH4 476 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 CCDC54Q8NEL0 328 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 TSEN15Q8WW01 171 aaKnown RBP10.86□□□□□ -0.67
SHMT2-227ENST00000557269 ITLN1Q8WWA0 313 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 FCGR1BQ92637 280 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 YIPF5Q969M3 257 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 MUL1Q969V5 352 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 MEGF10Q96KG7 1140 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 OR14A2Q96R54 314 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 DIRC2Q96SL1 478 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 SLC22A4Q9H015 551 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 PLEKHA1Q9HB21 404 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 FBXO9Q9UK97 447 aaPredicted RBP10.86□□□□□ -0.67
SHMT2-227ENST00000557269 EDARQ9UNE0 448 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 MPC1Q9Y5U8 109 aa10.86□□□□□ -0.67
SHMT2-227ENST00000557269 TRBV5-7A0A0A0MS05 114 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 PIN1P1O15428 100 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 CDC14BO60729 498 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 OCM2P0CE71 109 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 ZNF20P17024 532 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 PMELP40967 661 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 CD200P41217 278 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 MPPED2Q15777 294 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 CEACAM21Q3KPI0 293 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 FAM209AQ5JX71 171 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 PLCXD3Q63HM9 321 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 UNQ9370/PRO34162Q6UXP9 181 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 TMEM91Q6ZNR0 172 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 RNF144BQ7Z419 303 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 KRTAP1-3Q8IUG1 177 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 C11orf53Q8IXP5 236 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 ZDHHC23Q8IYP9 409 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 PARP16Q8N5Y8 322 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 OR8S1Q8NH09 359 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 NEU4Q8WWR8 484 aaPredicted RBP10.85□□□□□ -0.67
SHMT2-227ENST00000557269 ITFG2Q969R8 447 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 TRMT61AQ96FX7 289 aaKnown RBP10.85□□□□□ -0.67
SHMT2-227ENST00000557269 CHST5Q9GZS9 411 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 CXXC4Q9H2H0 198 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 PPIL3Q9H2H8 161 aaKnown RBP10.85□□□□□ -0.67
SHMT2-227ENST00000557269 DECR2Q9NUI1 292 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 DCAF16Q9NXF7 216 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 TAS2R4Q9NYW5 299 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 IL19Q9UHD0 177 aa10.85□□□□□ -0.67
SHMT2-227ENST00000557269 ZNF879B4DU55 563 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 TPD52L2O43399 206 aaKnown RBP10.84□□□□□ -0.67
SHMT2-227ENST00000557269 SSX4O60224 188 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 SC5DO75845 299 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 PTBP3O95758 552 aaKnown RBP10.84□□□□□ -0.67
SHMT2-227ENST00000557269 GRPP07492 148 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 DAOP14920 347 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 JUNBP17275 347 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-227ENST00000557269 GPM6AP51674 278 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 HOXA4Q00056 320 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-227ENST00000557269 FABP5Q01469 135 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 Q499Y3 187 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 ACSM3Q53FZ2 586 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 FAM27D1Q5T7N8 215 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 MOGAT3Q86VF5 341 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 FTMTQ8N4E7 242 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 ZNF525Q8N782 197 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 OR51A2Q8NGJ7 313 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 OR13C9Q8NGT0 318 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 ZNF420Q8TAQ5 688 aaPredicted RBP10.84□□□□□ -0.67
SHMT2-227ENST00000557269 TRMT10AQ8TBZ6 339 aaKnown RBP10.84□□□□□ -0.67
SHMT2-227ENST00000557269 NPRL2Q8WTW4 380 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 TMEM106AQ96A25 262 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 C10orf35Q96D05 121 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 RNF170Q96K19 258 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 DERL3Q96Q80 235 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 ZCCHC4Q9H5U6 513 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 SAP30LQ9HAJ7 183 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 GCM1Q9NP62 436 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 UFSP2Q9NUQ7 469 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 NDUFB11Q9NX14 153 aa10.84□□□□□ -0.67
SHMT2-227ENST00000557269 IGKV1-27A0A075B6S5 117 aa10.83□□□□□ -0.68
SHMT2-227ENST00000557269 TRAV8-7A0A075B6U6 113 aa10.83□□□□□ -0.68
SHMT2-227ENST00000557269 PQLC2LA1A4F0 135 aa10.83□□□□□ -0.68
SHMT2-227ENST00000557269 MAGEA13PA6NCF6 341 aa10.83□□□□□ -0.68
SHMT2-227ENST00000557269 ANXA2P2A6NMY6 339 aa10.83□□□□□ -0.68
SHMT2-227ENST00000557269 ZNF732B4DXR9 585 aa10.83□□□□□ -0.68
SHMT2-227ENST00000557269 C3orf80F5H4A9 247 aa10.83□□□□□ -0.68
SHMT2-227ENST00000557269 RP2O75695 350 aa10.83□□□□□ -0.68
SHMT2-227ENST00000557269 ERCC1P07992 297 aaPredicted RBP10.83□□□□□ -0.68
SHMT2-227ENST00000557269 ATF1P18846 271 aa10.83□□□□□ -0.68
SHMT2-227ENST00000557269 TNFSF4P23510 183 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms