RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 CTPS2Q9NRF8 586 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 THUMPD1Q9NXG2 353 aaKnown RBP3.3□□□□□ -1.88
PRPF39-209ENST00000556353 IFNKQ9P0W0 207 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 PRODH2Q9UF12 536 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 BCAP29Q9UHQ4 241 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 RPL26L1Q9UNX3 145 aaKnown RBP3.3□□□□□ -1.88
PRPF39-209ENST00000556353 RHBDD3Q9Y3P4 386 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 PHF3Q92576 2039 aaKnown RBP3.3□□□□□ -1.88
PRPF39-209ENST00000556353 ARHGAP21Q5T5U3 1957 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 COL6A5A8TX70 2615 aa3.3□□□□□ -1.88
PRPF39-209ENST00000556353 SONP18583 2426 aaKnown RBP3.29□□□□□ -1.88
PRPF39-209ENST00000556353 A0A0A6YYC8 382 aaPredicted RBP3.29□□□□□ -1.88
PRPF39-209ENST00000556353 LOC285095A0A1B0GVY8 99 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 PQLC2LA1A4F0 135 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 A6NIZ1 184 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 OR2AG2A6NM03 316 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 OR2AT4A6NND4 320 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 H3BMH7 237 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 H7C0C1 242 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 I3L1I5 382 aaPredicted RBP3.29□□□□□ -1.88
PRPF39-209ENST00000556353 ACOX3O15254 700 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 SLC31A2O15432 143 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 ZNF208O43345 1280 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 UGT1A9O60656 530 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 FCMRO60667 390 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 SLC25A14O95258 325 aaPredicted RBP3.29□□□□□ -1.88
PRPF39-209ENST00000556353 GOT2P00505 430 aaKnown RBP3.29□□□□□ -1.88
PRPF39-209ENST00000556353 SBK2P0C263 348 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 PSKH1P11801 424 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 H2AFXP16104 143 aaPredicted RBP3.29□□□□□ -1.88
PRPF39-209ENST00000556353 ZNF7P17097 686 aaPredicted RBP3.29□□□□□ -1.88
PRPF39-209ENST00000556353 NELFEP18615 380 aaKnown RBP3.29□□□□□ -1.88
PRPF39-209ENST00000556353 XRCC1P18887 633 aaPredicted RBP3.29□□□□□ -1.88
PRPF39-209ENST00000556353 UGT1A6P19224 532 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 MAGP20916 626 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 PHBP35232 272 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 ADRA1AP35348 466 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 SERPINB5P36952 375 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 TALDO1P37837 337 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 GRIA1P42261 906 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 KCNJ1P48048 391 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 RGS4P49798 205 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 KPNA2P52292 529 aaKnown RBP3.29□□□□□ -1.88
PRPF39-209ENST00000556353 ATP6V0D1P61421 351 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 CHRNB3Q05901 458 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 BAMBIQ13145 260 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 SLAMF1Q13291 335 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 MESDQ14696 234 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 ZNHIT3Q15649 155 aaPredicted RBP3.29□□□□□ -1.88
PRPF39-209ENST00000556353 TOMM34Q15785 309 aaPredicted RBP3.29□□□□□ -1.88
PRPF39-209ENST00000556353 KCTD19Q17RG1 926 aaPredicted RBP3.29□□□□□ -1.88
PRPF39-209ENST00000556353 EXOC3L2Q2M3D2 409 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 GPRC6AQ5T6X5 926 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 GPR107Q5VW38 600 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 HACD4Q5VWC8 232 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 PRAMEF8Q5VWM4 474 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 TIGD3Q6B0B8 471 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 OR5M10Q6IEU7 315 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 FRMPD2BQ6IN97 320 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 ZFP1Q6P2D0 407 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 Q6ZPB1 254 aaPredicted RBP3.29□□□□□ -1.88
PRPF39-209ENST00000556353 Q6ZRG5 221 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 SLC26A11Q86WA9 606 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 TRAPPC5Q8IUR0 188 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 ZNF567Q8N184 647 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 FAM86B1Q8N7N1 296 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 ACBD4Q8NC06 268 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 NECAP1Q8NC96 275 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 CATSPER1Q8NEC5 780 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 TMEM185AQ8NFB2 350 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 RNASE11Q8TAA1 199 aaKnown RBP3.29□□□□□ -1.88
PRPF39-209ENST00000556353 ACTL9Q8TC94 416 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 YIPF5Q969M3 257 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 TMBIM1Q969X1 311 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 SLCO4A1Q96BD0 722 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 SGTBQ96EQ0 304 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 VSIG2Q96IQ7 327 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 QKIQ96PU8 341 aaKnown RBP eCLIP3.29□□□□□ -1.88
PRPF39-209ENST00000556353 PANX1Q96RD7 426 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 SEC22CQ9BRL7 303 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 TMED9Q9BVK6 235 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 ZNF717Q9BY31 904 aaPredicted RBP3.29□□□□□ -1.88
PRPF39-209ENST00000556353 SLC38A1Q9H2H9 487 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 VCXQ9H320 206 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 UGT1A7Q9HAW7 530 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 UGT1A10Q9HAW8 530 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 UGT1A8Q9HAW9 530 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 LHX9Q9NQ69 397 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 SMOXQ9NWM0 555 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 KLRF1Q9NZS2 232 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 KLHL21Q9UJP4 597 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 SLC22A13Q9Y226 551 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 MRPS33Q9Y291 106 aaKnown RBP3.29□□□□□ -1.88
PRPF39-209ENST00000556353 RBMX2Q9Y388 322 aaKnown RBP3.29□□□□□ -1.88
PRPF39-209ENST00000556353 ARL5AQ9Y689 179 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 PRR14LQ5THK1 2151 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 NINQ8N4C6 2090 aa3.29□□□□□ -1.88
PRPF39-209ENST00000556353 hCG_1818297A0A087WSY0 165 aa3.28□□□□□ -1.88
PRPF39-209ENST00000556353 TMEM213A2RRL7 107 aa3.28□□□□□ -1.88
PRPF39-209ENST00000556353 A8MUA0 341 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms