RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 HIST1H1CP16403 213 aaKnown RBP10.34□□□□□ -0.75
VPS29-211ENST00000553128 CCL3L1P16619 93 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 GABRA2P47869 451 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 OMPP47874 163 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 RPS6KA3P51812 740 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 SLC36A3Q495N2 470 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 KLHL12Q53G59 568 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 KLHL22Q53GT1 634 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 WDR93Q6P2C0 686 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 DRAM2Q6UX65 266 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 SDR9C7Q8NEX9 313 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 TMEM185AQ8NFB2 350 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 RPS4Y2Q8TD47 263 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 ZNRF4Q8WWF5 429 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 TFAP2CQ92754 450 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 DPF1Q92782 380 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 LYZL4Q96KX0 146 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 NDEL1Q9GZM8 345 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 NSRP1Q9H0G5 558 aaKnown RBP10.34□□□□□ -0.75
VPS29-211ENST00000553128 RABEP2Q9H5N1 569 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 HEXA-AS1Q9H8Q6 139 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 NLKQ9UBE8 527 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 ZNF222Q9UK12 451 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 RHBDD3Q9Y3P4 386 aa10.34□□□□□ -0.75
VPS29-211ENST00000553128 LSM4Q9Y4Z0 139 aaKnown RBP10.34□□□□□ -0.75
VPS29-211ENST00000553128 TVP23AA6NH52 213 aa10.33□□□□□ -0.76
VPS29-211ENST00000553128 OR2AT4A6NND4 320 aa10.33□□□□□ -0.76
VPS29-211ENST00000553128 H0YHG0 523 aa10.33□□□□□ -0.76
VPS29-211ENST00000553128 TIPRLO75663 272 aa10.33□□□□□ -0.76
VPS29-211ENST00000553128 PSG2P11465 335 aa10.33□□□□□ -0.76
VPS29-211ENST00000553128 DOC2BQ14184 412 aa10.33□□□□□ -0.76
VPS29-211ENST00000553128 SSX2Q16385 188 aa10.33□□□□□ -0.76
VPS29-211ENST00000553128 KHDC1LQ5JSQ8 128 aa10.33□□□□□ -0.76
VPS29-211ENST00000553128 TMEM200BQ69YZ2 307 aa10.33□□□□□ -0.76
VPS29-211ENST00000553128 CENPVQ7Z7K6 275 aaPredicted RBP10.33□□□□□ -0.76
VPS29-211ENST00000553128 OR4M1Q8NGD0 313 aa10.33□□□□□ -0.76
VPS29-211ENST00000553128 OR10Z1Q8NGY1 313 aa10.33□□□□□ -0.76
VPS29-211ENST00000553128 OR5K1Q8NHB7 308 aa10.33□□□□□ -0.76
VPS29-211ENST00000553128 SGK3Q96BR1 496 aa10.33□□□□□ -0.76
VPS29-211ENST00000553128 COPS4Q9BT78 406 aa10.33□□□□□ -0.76
VPS29-211ENST00000553128 TMEM120AQ9BXJ8 343 aa10.33□□□□□ -0.76
VPS29-211ENST00000553128 SP140LQ9H930 580 aa10.33□□□□□ -0.76
VPS29-211ENST00000553128 ABCB10Q9NRK6 738 aa10.33□□□□□ -0.76
VPS29-211ENST00000553128 TMEM5Q9Y2B1 443 aa10.33□□□□□ -0.76
VPS29-211ENST00000553128 hCG_38984A0A1B0GV85 526 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 UNC119BA6NIH7 251 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 TBX1O43435 398 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 RENP00797 406 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 PAICSP22234 425 aaKnown RBP10.32□□□□□ -0.76
VPS29-211ENST00000553128 NOS3P29474 1203 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 PYCR1P32322 319 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 DDOSTP39656 456 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 IL5RAQ01344 420 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 DCTN2Q13561 401 aaKnown RBP10.32□□□□□ -0.76
VPS29-211ENST00000553128 CYLC2Q14093 348 aaPredicted RBP10.32□□□□□ -0.76
VPS29-211ENST00000553128 ZNF273Q14593 569 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 SEC23BQ15437 767 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 AGBL2Q5U5Z8 902 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 ERICH5Q6P6B1 374 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 C18orf65Q6ZTR6 163 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 RRM2BQ7LG56 351 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 DCXRQ7Z4W1 244 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 ZDHHC21Q8IVQ6 265 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 LINC00471Q8N535 108 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 OR8J3Q8NGG0 315 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 REEP6Q96HR9 211 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 PAPOLGQ9BWT3 736 aaKnown RBP10.32□□□□□ -0.76
VPS29-211ENST00000553128 OPA3Q9H6K4 179 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 YY1AP1Q9H869 796 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 ZNF319Q9P2F9 582 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 PITPNC1Q9UKF7 332 aa10.32□□□□□ -0.76
VPS29-211ENST00000553128 PLECQ15149 4684 aaKnown RBP10.31□□□□□ -0.76
VPS29-211ENST00000553128 SH2D7A6NKC9 451 aaPredicted RBP10.31□□□□□ -0.76
VPS29-211ENST00000553128 ODF3BA8MYP8 253 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 FAM220BPB1ANY3 271 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 F2RL2O00254 374 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 XRCC2O43543 280 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 GLCEO94923 617 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 CLIC3O95833 236 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 ARG1P05089 322 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 DCTDP32321 178 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 GNALP38405 381 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 GSK3AP49840 483 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 SLC25A1P53007 311 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 RPL31P62899 125 aaKnown RBP10.31□□□□□ -0.76
VPS29-211ENST00000553128 DGCR2P98153 550 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 SPIBQ01892 262 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 SMARCD3Q6STE5 483 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 CYB561A3Q8NBI2 242 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 TSPEARQ8WU66 669 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 HPSE2Q8WWQ2 592 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 TLCD1Q96CP7 247 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 PRR25Q96S07 402 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 KCNJ15Q99712 375 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 CENPMQ9NSP4 180 aa10.31□□□□□ -0.76
VPS29-211ENST00000553128 TRBV4-1A0A0J9YWV2 114 aa10.3□□□□□ -0.76
VPS29-211ENST00000553128 MEX3AA1L020 520 aaKnown RBP10.3□□□□□ -0.76
VPS29-211ENST00000553128 ZFPL1O95159 310 aa10.3□□□□□ -0.76
VPS29-211ENST00000553128 ZNF682O95780 498 aa10.3□□□□□ -0.76
VPS29-211ENST00000553128 ALDOBP05062 364 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms