RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 SNRNP70P08621 437 aaKnown RBP6.78□□□□□ -1.32
LIMA1-216ENST00000552909 IFI6P09912 130 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 HIST1H1BP16401 226 aaKnown RBP6.78□□□□□ -1.32
LIMA1-216ENST00000552909 HLA-GP17693 338 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 DDTP30046 118 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 CD80P33681 288 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 AQP2P41181 271 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 NAA10P41227 235 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-216ENST00000552909 MAP3K8P41279 467 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 CDX1P47902 265 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-216ENST00000552909 GSK3AP49840 483 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 PSG6Q00889 435 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 AWAT1Q58HT5 328 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 EXOSC6Q5RKV6 272 aaKnown RBP6.78□□□□□ -1.32
LIMA1-216ENST00000552909 ATPAF1Q5TC12 328 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-216ENST00000552909 NSUN5P2Q63ZY6 315 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 ANKRD16Q6P6B7 361 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 DHRS11Q6UWP2 260 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 GALNTL5Q7Z4T8 443 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 PAQR4Q8N4S7 273 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-216ENST00000552909 TMEM156Q8N614 296 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 ZNF615Q8N8J6 731 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 OR4N2Q8NGD1 307 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 OR13C2Q8NGS9 318 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 OR2G2Q8NGZ5 317 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 PFN4Q8NHR9 129 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 C16orf52Q8NHV5 167 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 C3orf49Q96BT1 292 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 MARS2Q96GW9 593 aaKnown RBP6.78□□□□□ -1.32
LIMA1-216ENST00000552909 KIRREL1Q96J84 757 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 AKR1E2Q96JD6 320 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 SMIM8Q96KF7 97 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 STACQ99469 402 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 ZNF426Q9BUY5 554 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 CHST5Q9GZS9 411 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 PRDM13Q9H4Q3 707 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 DUSP22Q9NRW4 184 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 GAR1Q9NY12 217 aaKnown RBP6.78□□□□□ -1.32
LIMA1-216ENST00000552909 COPS7AQ9UBW8 275 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 WDR45Q9Y484 360 aa6.78□□□□□ -1.32
LIMA1-216ENST00000552909 GTF3C1Q12789 2109 aa6.77□□□□□ -1.32
LIMA1-216ENST00000552909 C7orf77A4D0Y5 90 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 SYNDIG1LA6NDD5 238 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 CXorf65A6NEN9 183 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 TSTD3H0UI37 97 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 FBXO24O75426 580 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 CTAG2O75638 210 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 NKX2-2O95096 273 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 IFNA2P01563 188 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 AMY2AP04746 511 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 SP1P08047 785 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 HPGDP15428 266 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 NME2P22392 152 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 GNLYP22749 145 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 POU3F4P49335 361 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 SSR4P51571 173 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 DVL1P1P54792 670 aaPredicted RBP6.77□□□□□ -1.33
LIMA1-216ENST00000552909 PKIAP61925 76 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 PLA2G7Q13093 441 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 EBPQ15125 230 aaKnown RBP6.77□□□□□ -1.33
LIMA1-216ENST00000552909 NNATQ16517 81 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 DCST2Q5T1A1 773 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 CDPF1Q6NVV7 123 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 RPUSD3Q6P087 351 aaKnown RBP6.77□□□□□ -1.33
LIMA1-216ENST00000552909 C1QL4Q86Z23 238 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 ARL6IP6Q8N6S5 226 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 OR56B1Q8NGI3 324 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 TMEM239Q8WW34 195 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 VSTM2LQ96N03 204 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 GAL3ST4Q96RP7 486 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 NEU1Q99519 415 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 PRSS27Q9BQR3 290 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 PIGQQ9BRB3 760 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 C2orf88Q9BSF0 95 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 LMF2Q9BU23 707 aaKnown RBP6.77□□□□□ -1.33
LIMA1-216ENST00000552909 ATG5Q9H1Y0 275 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 FN3KRPQ9HA64 309 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 CYTL1Q9NRR1 136 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 C20orf141Q9NUB4 165 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 PARPBPQ9NWS1 579 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 ABI3Q9P2A4 366 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 PRODH2Q9UF12 536 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 POMT1Q9Y6A1 747 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 MYO7BQ6PIF6 2116 aa6.77□□□□□ -1.33
LIMA1-216ENST00000552909 A0A087X0M5 115 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 A0A1B0GX30 115 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 TVP23AA6NH52 213 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 EEF1E1-BLOC1S5C9J1V9 151 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 G3V3Y1 287 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 M0R036 132 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 TCAPO15273 167 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 KCNAB3O43448 404 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 ZFPL1O95159 310 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 WNT11O96014 354 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 CT45A8P0DMV1 189 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 CT45A9P0DMV2 189 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 ADRA2CP18825 462 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 PSMB6P28072 239 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 ADH6P28332 368 aa6.76□□□□□ -1.33
LIMA1-216ENST00000552909 SRSF1Q07955 248 aaKnown RBP eCLIP6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms