RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 DPM1O60762 260 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 H6PDO95479 791 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 AIFM1O95831 613 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 SERPINA5P05154 406 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 HOXC4P09017 264 aaPredicted RBP3.1□□□□□ -1.91
LIMA1-205ENST00000550592 CALM1P0DP23 149 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 CALM2P0DP24 149 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 CALM3P0DP25 149 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 PEX19P40855 299 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 SYKP43405 635 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 KRTAP12-2P59991 146 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 PRPSAP1Q14558 356 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 CCNJQ5T5M9 372 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 ANKRD22Q5VYY1 191 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 SPECC1LQ69YQ0 1117 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 C22orf42Q6IC83 251 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 REEP3Q6NUK4 255 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 ALKAL1Q6UXT8 129 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 TEX43Q6ZNM6 134 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 ZNF493Q6ZR52 646 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 BZW1Q7L1Q6 419 aaKnown RBP3.1□□□□□ -1.91
LIMA1-205ENST00000550592 CENPQQ7L2Z9 268 aaPredicted RBP3.1□□□□□ -1.91
LIMA1-205ENST00000550592 OTUD6AQ7L8S5 288 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 SCD5Q86SK9 330 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 TMEM25Q86YD3 366 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 IQCKQ8N0W5 287 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 Q8N976 141 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 ST6GALNAC3Q8NDV1 305 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 OR4A4PQ8NGN8 299 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 FAM81AQ8TBF8 368 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 ZNF502Q8TBZ5 544 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 TSEN15Q8WW01 171 aaKnown RBP3.1□□□□□ -1.91
LIMA1-205ENST00000550592 ZNF285Q96NJ3 590 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 CCDC94Q9BW85 323 aaPredicted RBP3.1□□□□□ -1.91
LIMA1-205ENST00000550592 TEKT3Q9BXF9 490 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 SPZ1Q9BXG8 430 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 MRPL40Q9NQ50 206 aaKnown RBP3.1□□□□□ -1.91
LIMA1-205ENST00000550592 ASF1BQ9NVP2 202 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 CD84Q9UIB8 345 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 SCML1Q9UN30 329 aa3.1□□□□□ -1.91
LIMA1-205ENST00000550592 ZNF106Q9H2Y7 1883 aaKnown RBP3.09□□□□□ -1.91
LIMA1-205ENST00000550592 SCN8AQ9UQD0 1980 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 MDC1Q14676 2089 aaKnown RBP3.09□□□□□ -1.91
LIMA1-205ENST00000550592 ERICH2A1L162 156 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 NDUFAB1O14561 156 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 LSM1O15116 133 aaKnown RBP3.09□□□□□ -1.91
LIMA1-205ENST00000550592 CHST1O43916 411 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 CACNG3O60359 315 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 RAD1O60671 282 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 ICOSLGO75144 302 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 SRP72O76094 671 aaKnown RBP3.09□□□□□ -1.91
LIMA1-205ENST00000550592 CISD3P0C7P0 127 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 CCDC172P0C7W6 258 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 GIMD1P0DJR0 217 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 KCNE1P15382 129 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 SLC1A1P43005 524 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 CX3CR1P49238 355 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 HERVK_113P61574 105 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 RPS15P62841 145 aaKnown RBP3.09□□□□□ -1.91
LIMA1-205ENST00000550592 SLC25A11Q02978 314 aaKnown RBP3.09□□□□□ -1.91
LIMA1-205ENST00000550592 XKR4Q5GH76 650 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 TSPO2Q5TGU0 170 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 SDHAF4Q5VUM1 108 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 SLC16A14Q7RTX9 510 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 HDDC2Q7Z4H3 204 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 PCP2Q8IVA1 136 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 ZBTB8OSQ8IWT0 167 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 ENTHD1Q8IYW4 607 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 PRELID2Q8N945 189 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 OR4S2Q8NH73 311 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 ZNF596Q8TC21 504 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 ITLN2Q8WWU7 325 aaPredicted RBP3.09□□□□□ -1.91
LIMA1-205ENST00000550592 ITFG2Q969R8 447 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 EXOSC8Q96B26 276 aaKnown RBP3.09□□□□□ -1.91
LIMA1-205ENST00000550592 FAM3DQ96BQ1 224 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 LINC00167Q96N53 147 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 SERPINB12Q96P63 405 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 PANX1Q96RD7 426 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 BBS2Q9BXC9 721 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 IFI27L2Q9H2X8 130 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 GEMIN7Q9H840 131 aaKnown RBP3.09□□□□□ -1.91
LIMA1-205ENST00000550592 AGPAT4Q9NRZ5 378 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 SAMSN1Q9NSI8 373 aaKnown RBP3.09□□□□□ -1.91
LIMA1-205ENST00000550592 FBXL12Q9NXK8 326 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 ZNF629Q9UEG4 869 aaPredicted RBP3.09□□□□□ -1.91
LIMA1-205ENST00000550592 LGALS13Q9UHV8 139 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 RAB26Q9ULW5 256 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 MRPS18BQ9Y676 258 aaKnown RBP3.09□□□□□ -1.91
LIMA1-205ENST00000550592 PTPRJQ12913 1337 aa3.09□□□□□ -1.91
LIMA1-205ENST00000550592 PLXNA2O75051 1894 aa3.09□□□□□ -1.92
LIMA1-205ENST00000550592 OBSL1O75147 1896 aa3.09□□□□□ -1.92
LIMA1-205ENST00000550592 ANAPC1Q9H1A4 1944 aa3.09□□□□□ -1.92
LIMA1-205ENST00000550592 TNRC6AQ8NDV7 1962 aaKnown RBP3.09□□□□□ -1.92
LIMA1-205ENST00000550592 SCN2AQ99250 2005 aa3.09□□□□□ -1.92
LIMA1-205ENST00000550592 COL27A1Q8IZC6 1860 aaPredicted RBP3.08□□□□□ -1.92
LIMA1-205ENST00000550592 TRBV9A0A0B4J1U6 114 aa3.08□□□□□ -1.92
LIMA1-205ENST00000550592 SMCO2A6NFE2 343 aa3.08□□□□□ -1.92
LIMA1-205ENST00000550592 C11orf94C9JXX5 98 aa3.08□□□□□ -1.92
LIMA1-205ENST00000550592 D6RAR5 112 aa3.08□□□□□ -1.92
LIMA1-205ENST00000550592 KLHL41O60662 606 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms