RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 HLA-HP01893 362 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 CSNK1A1P48729 337 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 ELLP55199 621 aaPredicted RBP12.75□□□□□ -0.37
LIMS1-215ENST00000544547 MTCP1P56278 107 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 PPP1R3BQ86XI6 285 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 OR52N4Q8NGI2 321 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 NAT6Q93015 286 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 LINC00615Q96LM1 132 aaPredicted RBP12.75□□□□□ -0.37
LIMS1-215ENST00000544547 RAB18Q9NP72 206 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 KLHL13Q9P2N7 655 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 SERGEFQ9UGK8 458 aa12.75□□□□□ -0.37
LIMS1-215ENST00000544547 TRAV14DV4A0A0A6YYC5 116 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 PIGPP57054 158 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 YPEL5P62699 121 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 ARSJQ5FYB0 599 aaPredicted RBP12.74□□□□□ -0.37
LIMS1-215ENST00000544547 AGBL4Q5VU57 503 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 MRPL21Q7Z2W9 205 aaKnown RBP12.74□□□□□ -0.37
LIMS1-215ENST00000544547 KISS1RQ969F8 398 aaPredicted RBP12.74□□□□□ -0.37
LIMS1-215ENST00000544547 CNTD2Q9H8S5 307 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 CUTCQ9NTM9 273 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 DOK5Q9P104 306 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 CHRNA9Q9UGM1 479 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 IL17BQ9UHF5 180 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 STRAPQ9Y3F4 350 aaKnown RBP12.74□□□□□ -0.37
LIMS1-215ENST00000544547 SCN10AQ9Y5Y9 1956 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 PAPPA2Q9BXP8 1791 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 TRAV36DV7A0A075B6V5 113 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 A0A087WV48 116 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 HSPB6O14558 160 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 MPZL1O95297 269 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 CD1CP29017 333 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 NKX2-1P43699 371 aaPredicted RBP12.74□□□□□ -0.37
LIMS1-215ENST00000544547 BIDP55957 195 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 BTG2P78543 158 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 H3F3AP84243 136 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 IL10RAQ13651 578 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 MOGAT2Q3SYC2 334 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 ZNF775Q96BV0 537 aaPredicted RBP12.74□□□□□ -0.37
LIMS1-215ENST00000544547 MED29Q9NX70 200 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 DMRT1Q9Y5R6 373 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 TMED7-TICAM2A0A0A6YYA0 188 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 TMEM127O75204 238 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 SERPINA7P05543 415 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 LILRA6Q6PI73 481 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 REEP6Q96HR9 211 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 ARHGAP5-AS1Q96IT6 56 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 KLK13Q9UKR3 277 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 PRSS37A4D1T9 235 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 SSSCA1O60232 199 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 THY1P04216 161 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 DDTP30046 118 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 SRSF5Q13243 272 aaKnown RBP12.74□□□□□ -0.37
LIMS1-215ENST00000544547 BCORP1Q8N888 145 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 OR52N5Q8NH56 324 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 GPR119Q8TDV5 335 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 PLK3Q9H4B4 646 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 SLC39A9Q9NUM3 307 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 DNAJB12Q9NXW2 375 aaKnown RBP12.74□□□□□ -0.37
LIMS1-215ENST00000544547 LIPGQ9Y5X9 500 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 DNAH12Q6ZR08 3092 aa12.74□□□□□ -0.37
LIMS1-215ENST00000544547 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.73□□□□□ -0.37
LIMS1-215ENST00000544547 NRG2O14511 850 aaPredicted RBP12.73□□□□□ -0.37
LIMS1-215ENST00000544547 ACTL6BO94805 426 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 CT62P0C5K7 136 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 PRF1P14222 555 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 RAB38P57729 211 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 ZNF385CQ66K41 422 aaPredicted RBP12.73□□□□□ -0.37
LIMS1-215ENST00000544547 RTN4IP1Q8WWV3 396 aaPredicted RBP12.73□□□□□ -0.37
LIMS1-215ENST00000544547 OR1E3Q8WZA6 343 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 LCORQ96JN0 433 aaPredicted RBP12.73□□□□□ -0.37
LIMS1-215ENST00000544547 HDAC8Q9BY41 377 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 LHX9Q9NQ69 397 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 PKIAP61925 76 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 RNF4P78317 190 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 GAMTQ14353 236 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 ETFRF1Q6IPR1 90 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 MRGPREQ86SM8 312 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 C16orf52Q8NHV5 167 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 TREM2Q9NZC2 230 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 CCDC187A0A096LP49 1063 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 OR5H15A6NDH6 313 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 OR5H1A6NKK0 313 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 TRGC2P03986 189 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 HABP2Q14520 560 aaPredicted RBP12.73□□□□□ -0.37
LIMS1-215ENST00000544547 ZNF595Q8IYB9 648 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 LRRC18Q8N456 261 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 IL1F10Q8WWZ1 152 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 RSPRY1Q96DX4 576 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 HSF4Q9ULV5 492 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 UNC13CQ8NB66 2214 aa12.73□□□□□ -0.37
LIMS1-215ENST00000544547 NSG1A0A0A6YYJ2 146 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 TRBV11-1A0A0K0K1C0 115 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 RNF222A6NCQ9 220 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 HEXAP06865 529 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 OR5H8P0DN80 308 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 MLF2Q15773 248 aaPredicted RBP12.72□□□□□ -0.37
LIMS1-215ENST00000544547 THNSL2Q86YJ6 484 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 ARRDC1Q8N5I2 433 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 ZNF485Q8NCK3 441 aa12.72□□□□□ -0.37
LIMS1-215ENST00000544547 CCNL2Q96S94 520 aaPredicted RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms