RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 RGS11O94810 467 aa12.49□□□□□ -0.41
VPS33A-209ENST00000544349 RAB3DO95716 219 aa12.49□□□□□ -0.41
VPS33A-209ENST00000544349 APOC1P02654 83 aa12.49□□□□□ -0.41
VPS33A-209ENST00000544349 PATE4P0C8F1 98 aa12.49□□□□□ -0.41
VPS33A-209ENST00000544349 ZNF735P0CB33 412 aa12.49□□□□□ -0.41
VPS33A-209ENST00000544349 FCGR2AP12318 317 aa12.49□□□□□ -0.41
VPS33A-209ENST00000544349 TAS2R19P59542 299 aa12.49□□□□□ -0.41
VPS33A-209ENST00000544349 C17orf107Q6ZR85 190 aa12.49□□□□□ -0.41
VPS33A-209ENST00000544349 ZNF100Q8IYN0 542 aa12.49□□□□□ -0.41
VPS33A-209ENST00000544349 PAQR4Q8N4S7 273 aaPredicted RBP12.49□□□□□ -0.41
VPS33A-209ENST00000544349 NKAIN3Q8N8D7 197 aa12.49□□□□□ -0.41
VPS33A-209ENST00000544349 OR4S1Q8NGB4 309 aa12.49□□□□□ -0.41
VPS33A-209ENST00000544349 OR13C9Q8NGT0 318 aa12.49□□□□□ -0.41
VPS33A-209ENST00000544349 FGFBP3Q8TAT2 258 aa12.49□□□□□ -0.41
VPS33A-209ENST00000544349 FAM46BQ96A09 425 aa12.49□□□□□ -0.41
VPS33A-209ENST00000544349 UPB1Q9UBR1 384 aa12.49□□□□□ -0.41
VPS33A-209ENST00000544349 TMA7Q9Y2S6 64 aaKnown RBP12.49□□□□□ -0.41
VPS33A-209ENST00000544349 UBE2QL1A1L167 161 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 E9PLN8 166 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 M0R135 149 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 FARS2O95363 451 aaKnown RBP12.48□□□□□ -0.41
VPS33A-209ENST00000544349 IFNA7P01567 189 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 AMY2AP04746 511 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 DBHP09172 617 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 CCL1P22362 96 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 CRYGSP22914 178 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 AGTR1P30556 359 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 GNALP38405 381 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 PCBD1P61457 104 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 ARF1P84077 181 aaKnown RBP12.48□□□□□ -0.41
VPS33A-209ENST00000544349 PSG4Q00888 419 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 SSBP1Q04837 148 aaKnown RBP12.48□□□□□ -0.41
VPS33A-209ENST00000544349 SLC22A6Q4U2R8 563 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 SFRP5Q5T4F7 317 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 ZNF774Q6NX45 483 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 IDO2Q6ZQW0 420 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 ABHD12BQ7Z5M8 362 aaPredicted RBP12.48□□□□□ -0.41
VPS33A-209ENST00000544349 TMEM229BQ8NBD8 167 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 SPTSSAQ969W0 71 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 ZNF799Q96GE5 643 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 PGAM5Q96HS1 289 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 GPR84Q9NQS5 396 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 CLCF1Q9UBD9 225 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 ARHGAP21Q5T5U3 1957 aa12.48□□□□□ -0.41
VPS33A-209ENST00000544349 LOC400499M0QZD8 3231 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 MEGF11A6BM72 1044 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 K7EM74 188 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 L7N2F9 121 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 ARPC5O15511 151 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 ZNHIT1O43257 154 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 IGLV3-1P01715 115 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 BDKRB2P30411 391 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 SLC6A9P48067 706 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 FOXG1P55316 489 aaPredicted RBP12.47□□□□□ -0.41
VPS33A-209ENST00000544349 ECH1Q13011 328 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 C4orf46Q504U0 113 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 CLLU1Q5K131 121 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 COMMD7Q86VX2 200 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 RBMXL3Q8N7X1 1067 aaKnown RBP12.47□□□□□ -0.41
VPS33A-209ENST00000544349 OR1M1Q8NGA1 313 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 OR1F12Q8NHA8 337 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 SARAFQ96BY9 339 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 SPACA5Q96QH8 159 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 TMPRSS13Q9BYE2 586 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 OR2H1Q9GZK4 316 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 AKAP13Q12802 2813 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 RTTNQ86VV8 2226 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 TMEM82A0PJX8 343 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 C5orf63A6NC05 138 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 OR6C6A6NF89 314 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 MCRIP1C9JLW8 97 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 F5H5P2 479 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 RAB27BO00194 218 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 SULT1C2O00338 296 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 CSN2P05814 226 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 MMP7P09237 267 aaPredicted RBP12.47□□□□□ -0.41
VPS33A-209ENST00000544349 QRFPP83859 136 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 FAM209AQ5JX71 171 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 ATPAF1Q5TC12 328 aaPredicted RBP12.47□□□□□ -0.41
VPS33A-209ENST00000544349 C9orf135Q5VTT2 229 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 DOK3Q7L591 496 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 P4HA3Q7Z4N8 544 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 TMED4Q7Z7H5 227 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 COMMD2Q86X83 199 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 OR13C8Q8NGS7 320 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 AKR7LQ8NHP1 331 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 TNFAIP8L1Q8WVP5 186 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 AQP3Q92482 292 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 GMPPAQ96IJ6 420 aaPredicted RBP12.47□□□□□ -0.41
VPS33A-209ENST00000544349 WNT5BQ9H1J7 359 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 SCPEP1Q9HB40 452 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 TMEM138Q9NPI0 162 aa12.47□□□□□ -0.41
VPS33A-209ENST00000544349 MED12LQ86YW9 2145 aa12.46□□□□□ -0.41
VPS33A-209ENST00000544349 FXYD6-FXYD2A0A087WZ82 144 aa12.46□□□□□ -0.41
VPS33A-209ENST00000544349 A0A0U1RQV5 110 aa12.46□□□□□ -0.41
VPS33A-209ENST00000544349 CD74P04233 296 aa12.46□□□□□ -0.41
VPS33A-209ENST00000544349 EIF2S3P41091 472 aaKnown RBP12.46□□□□□ -0.41
VPS33A-209ENST00000544349 NKPD1Q17RQ9 610 aa12.46□□□□□ -0.41
VPS33A-209ENST00000544349 KRTAP27-1Q3LI81 207 aa12.46□□□□□ -0.41
VPS33A-209ENST00000544349 DRAM2Q6UX65 266 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms