RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 USE1Q9NZ43 259 aa7.34□□□□□ -1.23
USP28-205ENST00000537706 NDUFA13Q9P0J0 144 aa7.34□□□□□ -1.23
USP28-205ENST00000537706 RPS6KA6Q9UK32 745 aa7.34□□□□□ -1.23
USP28-205ENST00000537706 STAB2Q8WWQ8 2551 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 IGHV3OR15-7A0A075B7D8 119 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 A0A1B0GWJ7 208 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 SEC14L6B5MCN3 397 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 SEMG1P04279 462 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 ALPLP05186 524 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 GGT2P36268 569 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 RGS8P57771 180 aaPredicted RBP7.33□□□□□ -1.24
USP28-205ENST00000537706 CYBRD1Q53TN4 286 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 FAM27D1Q5T7N8 215 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 SLC25A47Q6Q0C1 308 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 C16orf82Q7Z2V1 217 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 DHRSXQ8N5I4 330 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 PYURFQ96I23 114 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 TM2D3Q9BRN9 247 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 KCNG2Q9UJ96 466 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 MYRFQ9Y2G1 1151 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 RYR1P21817 5038 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 GMDSO60547 372 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 CST1P01037 141 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 GNAO1P09471 354 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 UGT2B15P54855 530 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 CDH12P55289 794 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 POU4F2Q12837 409 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 MALLQ13021 153 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 LRRC23Q53EV4 343 aaPredicted RBP7.33□□□□□ -1.24
USP28-205ENST00000537706 WDR38Q5JTN6 314 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 C8orf86Q6ZUL3 223 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 PATL1Q86TB9 770 aaKnown RBP7.33□□□□□ -1.24
USP28-205ENST00000537706 ZDHHC13Q8IUH4 622 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 CYGBQ8WWM9 190 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 P2RX4Q99571 388 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 SPATA25Q9BR10 227 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 ADAT1Q9BUB4 502 aaKnown RBP7.33□□□□□ -1.24
USP28-205ENST00000537706 YIPF3Q9GZM5 350 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 RAD21L1Q9H4I0 556 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 C14orf119Q9NWQ9 140 aa7.33□□□□□ -1.24
USP28-205ENST00000537706 OR6C6A6NF89 314 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 G3V2T6 193 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 TFAP2AP05549 437 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 NDUFB7P17568 137 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 PAX6P26367 422 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 INSL3P51460 131 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 ERVFRD-1P60508 538 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 ADARB1P78563 741 aaKnown RBP7.32□□□□□ -1.24
USP28-205ENST00000537706 FMODQ06828 376 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 FADDQ13158 208 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 ENDOGQ14249 297 aaKnown RBP7.32□□□□□ -1.24
USP28-205ENST00000537706 RGNQ15493 299 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 MAPK11Q15759 364 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 Q6ZS46 218 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 CBLL1Q75N03 491 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 KRT73Q86Y46 540 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 OSR2Q8N2R0 312 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 FAM216BQ8N7L0 139 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 C11orf65Q8NCR3 313 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 KLHL30-AS1Q8NEE0 82 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 TSPAN14Q8NG11 270 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 OR1F12Q8NHA8 337 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 OR5K1Q8NHB7 308 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 C12orf43Q96C57 262 aaKnown RBP7.32□□□□□ -1.24
USP28-205ENST00000537706 MED30Q96HR3 178 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 OSBPL10Q9BXB5 764 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 GABARAPL1Q9H0R8 117 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 ATPIF1Q9UII2 106 aa7.32□□□□□ -1.24
USP28-205ENST00000537706 TBL2Q9Y4P3 447 aaKnown RBP7.32□□□□□ -1.24
USP28-205ENST00000537706 PSMB11A5LHX3 300 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 TRIM64CA6NLI5 447 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 GNGT2O14610 69 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 FCN3O75636 299 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 ZNF682O95780 498 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 GRPP07492 148 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 ETS2P15036 469 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 ATP6V1B1P15313 513 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 KDELR2P33947 212 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 NAA10P41227 235 aaPredicted RBP7.31□□□□□ -1.24
USP28-205ENST00000537706 RAB13P51153 203 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 MVDP53602 400 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 RFX4Q33E94 735 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 GCNT6Q5T4J0 391 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 HCP5Q6MZN7 132 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 PLBD1Q6P4A8 553 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 DHRS4L2Q6PKH6 230 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 TBPL2Q6SJ96 375 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 OR2W3Q7Z3T1 314 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 ZDHHC21Q8IVQ6 265 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 FGFRL1Q8N441 504 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 GCSAMQ8N6F7 178 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 HDAC2Q92769 488 aaKnown RBP7.31□□□□□ -1.24
USP28-205ENST00000537706 MALSU1Q96EH3 234 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 TSC22D3Q99576 134 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 DNTTIP1Q9H147 329 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 BCL2L10Q9HD36 194 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 IL1RAPQ9NPH3 570 aa7.31□□□□□ -1.24
USP28-205ENST00000537706 SLC25A10Q9UBX3 287 aaPredicted RBP7.31□□□□□ -1.24
USP28-205ENST00000537706 SIRT4Q9Y6E7 314 aaPredicted RBP7.31□□□□□ -1.24
USP28-205ENST00000537706 CHP2O43745 196 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms