RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 E2F6O75461 281 aa12.16□□□□□ -0.46
VPS28-215ENST00000531924 IGHV4-59P01825 116 aa12.16□□□□□ -0.46
VPS28-215ENST00000531924 CALB2P22676 271 aa12.16□□□□□ -0.46
VPS28-215ENST00000531924 RPS7P62081 194 aaKnown RBP12.16□□□□□ -0.46
VPS28-215ENST00000531924 GUCA2AQ02747 115 aa12.16□□□□□ -0.46
VPS28-215ENST00000531924 PRDX4Q13162 271 aa12.16□□□□□ -0.46
VPS28-215ENST00000531924 GINS1Q14691 196 aa12.16□□□□□ -0.46
VPS28-215ENST00000531924 PLBD1Q6P4A8 553 aa12.16□□□□□ -0.46
VPS28-215ENST00000531924 OR5T2Q8NGG2 359 aa12.16□□□□□ -0.46
VPS28-215ENST00000531924 LRTOMTQ8WZ04 291 aa12.16□□□□□ -0.46
VPS28-215ENST00000531924 PIGCQ92535 297 aa12.16□□□□□ -0.46
VPS28-215ENST00000531924 RNF170Q96K19 258 aa12.16□□□□□ -0.46
VPS28-215ENST00000531924 HAO2Q9NYQ3 351 aa12.16□□□□□ -0.46
VPS28-215ENST00000531924 PDP1Q9P0J1 537 aaPredicted RBP12.16□□□□□ -0.46
VPS28-215ENST00000531924 A0A1B0GW55 424 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 TIMM23O14925 209 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 PAHP00439 452 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 FBP1P09467 338 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 DUX4L2P0CJ85 424 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 DUX4L3P0CJ86 424 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 DUX4L4P0CJ87 422 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 DUX4L5P0CJ88 424 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 DUX4L6P0CJ89 424 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 DUX4L7P0CJ90 424 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 MS4A2Q01362 244 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 DEFA6Q01524 100 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 SRSF4Q08170 494 aaKnown RBP12.15□□□□□ -0.46
VPS28-215ENST00000531924 DUX4L9Q6RFH8 374 aaPredicted RBP12.15□□□□□ -0.46
VPS28-215ENST00000531924 GDPGP1Q6ZNW5 385 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 PRSS45Q7RTY3 260 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 KRT77Q7Z794 578 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 PAPD5Q8NDF8 572 aaKnown RBP12.15□□□□□ -0.46
VPS28-215ENST00000531924 OR10Z1Q8NGY1 313 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 OTOSQ8NHW6 89 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 NPRL2Q8WTW4 380 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 RPL3LQ92901 407 aaKnown RBP12.15□□□□□ -0.46
VPS28-215ENST00000531924 ITPKCQ96DU7 683 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 ASB9Q96DX5 294 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 MED30Q96HR3 178 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 DMRTB1Q96MA1 342 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 AMELYQ99218 206 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 PKP2Q99959 881 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 PPP1R3EQ9H7J1 279 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 NIPAL2Q9H841 368 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 SNTG1Q9NSN8 517 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 ZNF319Q9P2F9 582 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 DUX4Q9UBX2 424 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 ZNF391Q9UJN7 358 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 LAMP5Q9UJQ1 280 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 RNF114Q9Y508 228 aa12.15□□□□□ -0.46
VPS28-215ENST00000531924 A0A1W2PQ09 198 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 ARRDC5A6NEK1 342 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 SELENOFO60613 162 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 CST4P01036 141 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 NDUFB7P17568 137 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 IER3P46695 156 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 ELF3P78545 371 aaPredicted RBP12.14□□□□□ -0.47
VPS28-215ENST00000531924 RELBQ01201 579 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 BLMHQ13867 455 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 MIDNQ504T8 468 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 COMMD2Q86X83 199 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 LDLRAD3Q86YD5 345 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 ZDHHC23Q8IYP9 409 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 FGFRL1Q8N441 504 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 CCDC197Q8NCU1 140 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 LY6G5BQ8NDX9 201 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 OR5P3Q8WZ94 311 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 UBE2FQ969M7 185 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 SEH1LQ96EE3 360 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 DNTTIP1Q9H147 329 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 TLNRD1Q9H1K6 362 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 SIRT7Q9NRC8 400 aa12.14□□□□□ -0.47
VPS28-215ENST00000531924 A0A1W2PRD5 423 aa12.13□□□□□ -0.47
VPS28-215ENST00000531924 A0A1W2PRF3 423 aa12.13□□□□□ -0.47
VPS28-215ENST00000531924 A0A1W2PRM7 423 aa12.13□□□□□ -0.47
VPS28-215ENST00000531924 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.13□□□□□ -0.47
VPS28-215ENST00000531924 PRODHO43272 600 aa12.13□□□□□ -0.47
VPS28-215ENST00000531924 AKR7A2O43488 359 aa12.13□□□□□ -0.47
VPS28-215ENST00000531924 OSMP13725 252 aa12.13□□□□□ -0.47
VPS28-215ENST00000531924 HOXB6P17509 224 aaKnown RBP12.13□□□□□ -0.47
VPS28-215ENST00000531924 MAP2K3P46734 347 aa12.13□□□□□ -0.47
VPS28-215ENST00000531924 GABRA2P47869 451 aa12.13□□□□□ -0.47
VPS28-215ENST00000531924 TGM4P49221 684 aa12.13□□□□□ -0.47
VPS28-215ENST00000531924 PSMA6P60900 246 aaKnown RBP12.13□□□□□ -0.47
VPS28-215ENST00000531924 ATPAF1Q5TC12 328 aaPredicted RBP12.13□□□□□ -0.47
VPS28-215ENST00000531924 STUMQ69YW2 141 aa12.13□□□□□ -0.47
VPS28-215ENST00000531924 DHRS7BQ6IAN0 325 aaPredicted RBP12.13□□□□□ -0.47
VPS28-215ENST00000531924 THAP5Q7Z6K1 395 aa12.13□□□□□ -0.47
VPS28-215ENST00000531924 CPOQ8IVL8 374 aa12.13□□□□□ -0.47
VPS28-215ENST00000531924 PIP4P2Q8N4L2 257 aa12.13□□□□□ -0.47
VPS28-215ENST00000531924 RAB3IPQ96QF0 476 aaPredicted RBP12.13□□□□□ -0.47
VPS28-215ENST00000531924 DCTN5Q9BTE1 182 aa12.13□□□□□ -0.47
VPS28-215ENST00000531924 THTPAQ9BU02 230 aa12.13□□□□□ -0.47
VPS28-215ENST00000531924 WDR13Q9H1Z4 485 aa12.13□□□□□ -0.47
VPS28-215ENST00000531924 YY1AP1Q9H869 796 aa12.13□□□□□ -0.47
VPS28-215ENST00000531924 SLC25A10Q9UBX3 287 aaPredicted RBP12.13□□□□□ -0.47
VPS28-215ENST00000531924 ZNF816-ZNF321PA0A0X1KG74 233 aa12.12□□□□□ -0.47
VPS28-215ENST00000531924 MEIOCA2RUB1 952 aa12.12□□□□□ -0.47
VPS28-215ENST00000531924 NPFFO15130 113 aa12.12□□□□□ -0.47
VPS28-215ENST00000531924 GSC2O15499 205 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms