RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ERVS71-1P61550 626 aa18.08■□□□□ 0.48
VPS28-208ENST00000527797 ZNF79Q15937 498 aa18.08■□□□□ 0.48
VPS28-208ENST00000527797 PLCXD3Q63HM9 321 aa18.08■□□□□ 0.48
VPS28-208ENST00000527797 AWAT2Q6E213 333 aa18.08■□□□□ 0.48
VPS28-208ENST00000527797 C22orf34Q6ZV56 151 aa18.08■□□□□ 0.48
VPS28-208ENST00000527797 RNF144BQ7Z419 303 aa18.08■□□□□ 0.48
VPS28-208ENST00000527797 GALNT11Q8NCW6 608 aa18.08■□□□□ 0.48
VPS28-208ENST00000527797 S100A16Q96FQ6 103 aaKnown RBP18.08■□□□□ 0.48
VPS28-208ENST00000527797 SRRQ9GZT4 340 aa18.08■□□□□ 0.48
VPS28-208ENST00000527797 RHBDL2Q9NX52 303 aa18.08■□□□□ 0.48
VPS28-208ENST00000527797 ERRFI1Q9UJM3 462 aaPredicted RBP18.08■□□□□ 0.48
VPS28-208ENST00000527797 MRPS28Q9Y2Q9 187 aaKnown RBP18.08■□□□□ 0.48
VPS28-208ENST00000527797 TMEM272A0A1B0GTI8 110 aa18.07■□□□□ 0.48
VPS28-208ENST00000527797 FAM230AA0A1W2PPH8 454 aa18.07■□□□□ 0.48
VPS28-208ENST00000527797 ANKRD30BLA7E2S9 258 aa18.07■□□□□ 0.48
VPS28-208ENST00000527797 BPNT1O95861 308 aa18.07■□□□□ 0.48
VPS28-208ENST00000527797 SELEP16581 610 aa18.07■□□□□ 0.48
VPS28-208ENST00000527797 FUT6P51993 359 aa18.07■□□□□ 0.48
VPS28-208ENST00000527797 MADCAM1Q13477 382 aa18.07■□□□□ 0.48
VPS28-208ENST00000527797 PYDC2Q56P42 97 aa18.07■□□□□ 0.48
VPS28-208ENST00000527797 OR2T2Q6IF00 324 aa18.07■□□□□ 0.48
VPS28-208ENST00000527797 LILRB4Q8NHJ6 448 aa18.07■□□□□ 0.48
VPS28-208ENST00000527797 PRR7Q8TB68 274 aa18.07■□□□□ 0.48
VPS28-208ENST00000527797 BORCS8Q96FH0 119 aa18.07■□□□□ 0.48
VPS28-208ENST00000527797 SPEF1Q9Y4P9 236 aa18.07■□□□□ 0.48
VPS28-208ENST00000527797 RP1L1Q8IWN7 2480 aaPredicted RBP18.06■□□□□ 0.48
VPS28-208ENST00000527797 FAM90A27PA6NNH2 459 aa18.06■□□□□ 0.48
VPS28-208ENST00000527797 VGLL3A8MV65 326 aa18.06■□□□□ 0.48
VPS28-208ENST00000527797 OR3A4PP47883 348 aa18.06■□□□□ 0.48
VPS28-208ENST00000527797 PITPNBP48739 271 aa18.06■□□□□ 0.48
VPS28-208ENST00000527797 MTCP1P56278 107 aa18.06■□□□□ 0.48
VPS28-208ENST00000527797 PRDX4Q13162 271 aa18.06■□□□□ 0.48
VPS28-208ENST00000527797 FBXL19-AS1Q494R0 122 aa18.06■□□□□ 0.48
VPS28-208ENST00000527797 MTFR2Q6P444 385 aa18.06■□□□□ 0.48
VPS28-208ENST00000527797 GLIPR1L1Q6UWM5 242 aa18.06■□□□□ 0.48
VPS28-208ENST00000527797 LHFPL2Q6ZUX7 228 aa18.06■□□□□ 0.48
VPS28-208ENST00000527797 GDPD1Q8N9F7 314 aa18.06■□□□□ 0.48
VPS28-208ENST00000527797 DTX3Q8N9I9 347 aa18.06■□□□□ 0.48
VPS28-208ENST00000527797 HAVCR1Q96D42 359 aa18.06■□□□□ 0.48
VPS28-208ENST00000527797 MARS2Q96GW9 593 aaKnown RBP18.06■□□□□ 0.48
VPS28-208ENST00000527797 CCDC32Q9BV29 185 aa18.06■□□□□ 0.48
VPS28-208ENST00000527797 PPP1R3EQ9H7J1 279 aa18.06■□□□□ 0.48
VPS28-208ENST00000527797 GPR160Q9UJ42 338 aa18.06■□□□□ 0.48
VPS28-208ENST00000527797 RBP2P50120 134 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 ATP1B3P54709 279 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 PLA2G7Q13093 441 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 SEZ6L2Q6UXD5 910 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 BAIAP2L2Q6UXY1 529 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 ZDHHC23Q8IYP9 409 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 BHLHE23Q8NDY6 225 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 KLF14Q8TD94 323 aaPredicted RBP18.05■□□□□ 0.48
VPS28-208ENST00000527797 PTX4Q96A99 478 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 RFT1Q96AA3 541 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 LRRC46Q96FV0 321 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 HIST1H2AAQ96QV6 131 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 SDHCQ99643 169 aaPredicted RBP18.05■□□□□ 0.48
VPS28-208ENST00000527797 KCNK15Q9H427 330 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 MPC1Q9Y5U8 109 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 TPRP12270 2363 aaKnown RBP18.05■□□□□ 0.48
VPS28-208ENST00000527797 ITPR1Q14643 2758 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 LDLRAD4O15165 306 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 UPK1BO75841 260 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 UBBP0CG47 229 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 PTGFRP43088 359 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 NR4A2P43354 598 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 CRIP3Q6Q6R5 217 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 WFDC8Q8IUA0 241 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 CA5BP1Q8WTZ4 195 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 TNFAIP8L1Q8WVP5 186 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 RNASE6Q93091 150 aaKnown RBP18.05■□□□□ 0.48
VPS28-208ENST00000527797 ZC3HAV1LQ96H79 300 aaKnown RBP18.05■□□□□ 0.48
VPS28-208ENST00000527797 RABL2AQ9UBK7 228 aaPredicted RBP18.05■□□□□ 0.48
VPS28-208ENST00000527797 RABL2BQ9UNT1 228 aa18.05■□□□□ 0.48
VPS28-208ENST00000527797 A0A0G2JMP0 313 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 A0A0X1KG70 313 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 GNLYP22749 145 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 CD40P25942 277 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 EFNB2P52799 333 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 TLE1Q04724 770 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 PSG7Q13046 419 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 ZNF181Q2M3W8 571 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 CEACAM21Q3KPI0 293 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 ZNF718Q3SXZ3 478 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 PYHIN1Q6K0P9 492 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 TMEM108Q6UXF1 575 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 SNX29P2Q8IUI4 249 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 OR4M2Q8NGB6 313 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 OR5D18Q8NGL1 313 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 S100A13Q99584 98 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 ABCB10Q9NRK6 738 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 CRIM1Q9NZV1 1036 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 MRPL15Q9P015 296 aaKnown RBP18.04■□□□□ 0.48
VPS28-208ENST00000527797 MYEF2Q9P2K5 600 aaKnown RBP18.04■□□□□ 0.48
VPS28-208ENST00000527797 GHRLQ9UBU3 117 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 RAB22AQ9UL26 194 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 ING4Q9UNL4 249 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 POLEQ07864 2286 aa18.04■□□□□ 0.48
VPS28-208ENST00000527797 NKX2-6A6NCS4 301 aa18.03■□□□□ 0.48
VPS28-208ENST00000527797 THBDP07204 575 aa18.03■□□□□ 0.48
VPS28-208ENST00000527797 VSIG8P0DPA2 414 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms