RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 C8orf17Q9NRJ1 99 aa4.58□□□□□ -1.68
NUP54-215ENST00000514313 CLEC2DQ9UHP7 191 aa4.58□□□□□ -1.68
NUP54-215ENST00000514313 KLK12Q9UKR0 248 aa4.58□□□□□ -1.68
NUP54-215ENST00000514313 CFL2Q9Y281 166 aa4.58□□□□□ -1.68
NUP54-215ENST00000514313 YTHDF2Q9Y5A9 579 aaKnown RBP4.58□□□□□ -1.68
NUP54-215ENST00000514313 TNS2Q63HR2 1409 aa4.57□□□□□ -1.68
NUP54-215ENST00000514313 PSPHP1O15172 72 aa4.57□□□□□ -1.68
NUP54-215ENST00000514313 RBFOX2O43251 390 aaKnown RBP eCLIP4.57□□□□□ -1.68
NUP54-215ENST00000514313 OR5AL1P0C617 328 aa4.57□□□□□ -1.68
NUP54-215ENST00000514313 APLNRP35414 380 aa4.57□□□□□ -1.68
NUP54-215ENST00000514313 NAB1Q13506 487 aa4.57□□□□□ -1.68
NUP54-215ENST00000514313 RNASE13Q5GAN3 156 aaKnown RBP4.57□□□□□ -1.68
NUP54-215ENST00000514313 ZNF684Q5T5D7 378 aa4.57□□□□□ -1.68
NUP54-215ENST00000514313 DEGS2Q6QHC5 323 aa4.57□□□□□ -1.68
NUP54-215ENST00000514313 SLC7A5P1Q8MH63 180 aa4.57□□□□□ -1.68
NUP54-215ENST00000514313 CYB561A3Q8NBI2 242 aa4.57□□□□□ -1.68
NUP54-215ENST00000514313 Q96MT0 163 aa4.57□□□□□ -1.68
NUP54-215ENST00000514313 C18orf15Q96N68 181 aa4.57□□□□□ -1.68
NUP54-215ENST00000514313 BEX2Q9BXY8 128 aa4.57□□□□□ -1.68
NUP54-215ENST00000514313 ULBP2Q9BZM5 246 aa4.57□□□□□ -1.68
NUP54-215ENST00000514313 C6orf50Q9HD87 102 aa4.57□□□□□ -1.68
NUP54-215ENST00000514313 HEBP1Q9NRV9 189 aa4.57□□□□□ -1.68
NUP54-215ENST00000514313 RMND1Q9NWS8 449 aa4.57□□□□□ -1.68
NUP54-215ENST00000514313 RAB26Q9ULW5 256 aa4.57□□□□□ -1.68
NUP54-215ENST00000514313 IGHV3-72A0A0B4J1Y9 119 aa4.56□□□□□ -1.68
NUP54-215ENST00000514313 A0A1B0GW15 77 aa4.56□□□□□ -1.68
NUP54-215ENST00000514313 OR5H1A6NKK0 313 aa4.56□□□□□ -1.68
NUP54-215ENST00000514313 M0R1B8 84 aa4.56□□□□□ -1.68
NUP54-215ENST00000514313 GATCO43716 136 aaKnown RBP4.56□□□□□ -1.68
NUP54-215ENST00000514313 IGHV3-11P01762 117 aa4.56□□□□□ -1.68
NUP54-215ENST00000514313 MT-ND4P03905 459 aa4.56□□□□□ -1.68
NUP54-215ENST00000514313 LRRC63Q05C16 580 aa4.56□□□□□ -1.68
NUP54-215ENST00000514313 THOC7Q6I9Y2 204 aaKnown RBP4.56□□□□□ -1.68
NUP54-215ENST00000514313 NANOGP8Q6NSW7 305 aa4.56□□□□□ -1.68
NUP54-215ENST00000514313 FAHD1Q6P587 224 aa4.56□□□□□ -1.68
NUP54-215ENST00000514313 COPS6Q7L5N1 327 aa4.56□□□□□ -1.68
NUP54-215ENST00000514313 MDP1Q86V88 176 aa4.56□□□□□ -1.68
NUP54-215ENST00000514313 CA13Q8N1Q1 262 aa4.56□□□□□ -1.68
NUP54-215ENST00000514313 DRAM1Q8N682 238 aa4.56□□□□□ -1.68
NUP54-215ENST00000514313 CIRBP-AS1Q8TBR5 109 aa4.56□□□□□ -1.68
NUP54-215ENST00000514313 DCAKDQ8WVC6 231 aa4.56□□□□□ -1.68
NUP54-215ENST00000514313 ADTRPQ96IZ2 230 aa4.56□□□□□ -1.68
NUP54-215ENST00000514313 RSG1Q9BU20 258 aa4.56□□□□□ -1.68
NUP54-215ENST00000514313 SFXN3Q9BWM7 321 aa4.56□□□□□ -1.68
NUP54-215ENST00000514313 TREM1Q9NP99 234 aa4.56□□□□□ -1.68
NUP54-215ENST00000514313 BRCA1P38398 1863 aaKnown RBP4.56□□□□□ -1.68
NUP54-215ENST00000514313 ATRXP46100 2492 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 AK9Q5TCS8 1911 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 FAM240AA0A1B0GVK7 77 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 J3QT63 122 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 MANBAO00462 879 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 ZMPSTE24O75844 475 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 HLA-DQA1P01909 254 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 ZNF688P0C7X2 276 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 PRKACBP22694 351 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 PAX6P26367 422 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 MTPNP58546 118 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 C2orf80Q0P641 193 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 PSG3Q16557 428 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 PRSS8Q16651 343 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 ACTL10Q5JWF8 245 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 LCE3EQ5T5B0 92 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 SETD3Q86TU7 594 aaPredicted RBP4.55□□□□□ -1.68
NUP54-215ENST00000514313 TMEM256Q8N2U0 113 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 OR6K2Q8NGY2 324 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 ENKURQ8TC29 256 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 FOPNLQ96NB1 174 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 CDX2Q99626 313 aaPredicted RBP4.55□□□□□ -1.68
NUP54-215ENST00000514313 DDIT4Q9NX09 232 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 SDHAF2Q9NX18 166 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 VAPAQ9P0L0 249 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 POFUT2Q9Y2G5 429 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 PPIL1Q9Y3C6 166 aa4.55□□□□□ -1.68
NUP54-215ENST00000514313 HSBP1L1C9JCN9 74 aa4.54□□□□□ -1.68
NUP54-215ENST00000514313 M0R1X1 148 aa4.54□□□□□ -1.68
NUP54-215ENST00000514313 EIF1BO60739 113 aaKnown RBP4.54□□□□□ -1.68
NUP54-215ENST00000514313 MED6O75586 246 aa4.54□□□□□ -1.68
NUP54-215ENST00000514313 VAMP5O95183 116 aa4.54□□□□□ -1.68
NUP54-215ENST00000514313 IGLV3-25P01717 112 aa4.54□□□□□ -1.68
NUP54-215ENST00000514313 PCK1P35558 622 aa4.54□□□□□ -1.68
NUP54-215ENST00000514313 EIF1P41567 113 aaKnown RBP4.54□□□□□ -1.68
NUP54-215ENST00000514313 RGS6P49758 472 aa4.54□□□□□ -1.68
NUP54-215ENST00000514313 ZNF691Q5VV52 312 aa4.54□□□□□ -1.68
NUP54-215ENST00000514313 OR4M1Q8NGD0 313 aa4.54□□□□□ -1.68
NUP54-215ENST00000514313 OR1S1Q8NH92 325 aa4.54□□□□□ -1.68
NUP54-215ENST00000514313 UBALD1Q8TB05 177 aa4.54□□□□□ -1.68
NUP54-215ENST00000514313 ZFAND1Q8TCF1 268 aa4.54□□□□□ -1.68
NUP54-215ENST00000514313 SMARCD1Q96GM5 515 aa4.54□□□□□ -1.68
NUP54-215ENST00000514313 C1orf198Q9H425 327 aa4.54□□□□□ -1.68
NUP54-215ENST00000514313 NXT1Q9UKK6 140 aaKnown RBP4.54□□□□□ -1.68
NUP54-215ENST00000514313 WIF1Q9Y5W5 379 aa4.54□□□□□ -1.68
NUP54-215ENST00000514313 TSPOAP1O95153 1857 aa4.54□□□□□ -1.68
NUP54-215ENST00000514313 ZNF608Q9ULD9 1512 aaPredicted RBP4.53□□□□□ -1.68
NUP54-215ENST00000514313 PRRC2AP48634 2157 aaKnown RBP4.53□□□□□ -1.68
NUP54-215ENST00000514313 IGHV7-4-1A0A0J9YVY3 117 aa4.53□□□□□ -1.68
NUP54-215ENST00000514313 MYL12BO14950 172 aa4.53□□□□□ -1.68
NUP54-215ENST00000514313 ENSAO43768 121 aaKnown RBP4.53□□□□□ -1.68
NUP54-215ENST00000514313 MMP7P09237 267 aaPredicted RBP4.53□□□□□ -1.68
NUP54-215ENST00000514313 ME2P23368 584 aa4.53□□□□□ -1.68
NUP54-215ENST00000514313 OPRK1P41145 380 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms