RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ZNF670Q9BS34 389 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 TMEM208Q9BTX3 173 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 NDUFAF3Q9BU61 184 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ZNF426Q9BUY5 554 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 FICDQ9BVA6 458 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 OSBPL11Q9BXB4 747 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 UGT2B28Q9BY64 529 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ULBP1Q9BZM6 244 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ROPN1BQ9BZX4 212 aaPredicted RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 SRRQ9GZT4 340 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 DCSTAMPQ9H295 470 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 REEP4Q9H6H4 257 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ROPN1Q9HAT0 212 aaPredicted RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 CACYBPQ9HB71 228 aaKnown RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 SLC25A19Q9HC21 320 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 EML4Q9HC35 981 aaKnown RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 HRASLSQ9HDD0 168 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 YAE1D1Q9NRH1 226 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 SPANXA1Q9NS26 97 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 FAM49BQ9NUQ9 324 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 NLE1Q9NVX2 485 aaPredicted RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 MTCH1Q9NZJ7 389 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 CALML5Q9NZT1 146 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 TMEM216Q9P0N5 145 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 GSKIPQ9P0R6 139 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 GHRLQ9UBU3 117 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 COPS7AQ9UBW8 275 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 DUX4Q9UBX2 424 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ZNF639Q9UID6 485 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 CRLS1Q9UJA2 301 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ANAPC7Q9UJX3 599 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 FBXO5Q9UKT4 447 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 TBC1D24Q9ULP9 559 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 NPIPA1Q9UND3 350 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 PLA2G4CQ9UP65 541 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 SLC7A11Q9UPY5 501 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 PEX16Q9Y5Y5 336 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 NPTNQ9Y639 398 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ALG6Q9Y672 507 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ARL5AQ9Y689 179 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 TMEM56-RWDD3S4R434 201 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ADAMTS12P58397 1594 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 KIF26AQ9ULI4 1882 aaPredicted RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 KIF21BO75037 1637 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 TOP2BQ02880 1626 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ABCA9Q8IUA7 1624 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 DICER1Q9UPY3 1922 aaKnown RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 MYH9P35579 1960 aaKnown RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 ABCC5O15440 1437 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 NCAPD2Q15021 1401 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 FGD6Q6ZV73 1430 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 SCN4AP35499 1836 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ARAP3Q8WWN8 1544 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 CEP170BQ9Y4F5 1589 aaPredicted RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 LAMC3Q9Y6N6 1575 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 TRAV8-7A0A075B6U6 113 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 KCNE1BA0A087WTH5 132 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 A0A0U1RRA0 63 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 PNMA8CA0A1B0GUJ8 204 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 A0A1B0GW15 77 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 TMEM89A2RUT3 159 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 OR11H12B2RN74 326 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 TMX2-CTNND1H3BSU7 103 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 H7C417 338 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 J3QRK9 145 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 M0R143 59 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 AIPO00170 330 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 GOSR2O14653 212 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 MRASO14807 208 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 BCKDKO14874 412 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 CHADO15335 359 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 RNF13O43567 381 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 TM7SF2O76062 418 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 AQP8O94778 261 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 OR4F21O95013 312 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 KCNK2O95069 426 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 GADD45GO95257 159 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 FADS2O95864 444 aaKnown RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 CYB5R3P00387 301 aaPredicted RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 CST4P01036 141 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 IFNA5P01569 189 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 MMP1P03956 469 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 IGKV4-1P06312 121 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 C8GP07360 202 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 HTR1AP08908 422 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 UBCP0CG48 685 aaKnown RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 GABRA1P14867 456 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 HLA-GP17693 338 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 FUT1P19526 365 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 RAB3BP20337 219 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 PVALBP20472 110 aaPredicted RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 UQCRC2P22695 453 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 CYP2F1P24903 491 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 HLA-DMAP28067 261 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 FMO3P31513 532 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 GGT2P36268 569 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 RPS10P46783 165 aaKnown RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 GCLMP48507 274 aa1.39□□□□□ -2.19
NUP54-208ENST00000508604 ARRB1P49407 418 aaPredicted RBP1.39□□□□□ -2.19
NUP54-208ENST00000508604 RPL14P50914 215 aaKnown RBP1.39□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms