RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 H3BSA7 217 aa15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 TIMM8AO60220 97 aaPredicted RBP15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 SRSF10O75494 262 aaKnown RBP15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 RPP14O95059 124 aaKnown RBP15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 COX5BP10606 129 aa15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 HSD11B1P28845 292 aa15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 PSMB10P40306 273 aa15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 GTF2A1P52655 376 aaPredicted RBP15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 LMO4P61968 165 aa15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 ALKBH1Q13686 389 aaKnown RBP15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 TAF13Q15543 124 aa15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 TRAM1Q15629 374 aa15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 ZMAT1Q5H9K5 638 aa15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 FOXB2Q5VYV0 432 aa15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 CCL17Q92583 94 aa15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 RAB1CQ92928 201 aa15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 RNF166Q96A37 237 aaPredicted RBP15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 PGLYRP3Q96LB9 341 aa15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 ZNF665Q9H7R5 613 aa15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 CGGBP1Q9UFW8 167 aaPredicted RBP15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 RSL24D1Q9UHA3 163 aaKnown RBP15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 STUB1Q9UNE7 303 aa15.27■□□□□ 0.04
SQSTM1-209ENST00000504627 PNMA8CA0A1B0GUJ8 204 aa15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 CCDC160A6NGH7 325 aa15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 LOC110117498-PIK3R3F6TDL0 507 aa15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 ICMTO60725 284 aa15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 APOC1P02654 83 aa15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 OTX1P32242 354 aaPredicted RBP15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 MMP16P51512 607 aa15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 CCR9P51686 369 aa15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 FAHD2BQ6P2I3 314 aaPredicted RBP15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 SLC16A12Q6ZSM3 486 aa15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 OR2G2Q8NGZ5 317 aa15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 OR1F12Q8NHA8 337 aa15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 SPTSSAQ969W0 71 aa15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 ISOC1Q96CN7 298 aa15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 RAB39BQ96DA2 213 aa15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 FAHD2AQ96GK7 314 aa15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 DIRC2Q96SL1 478 aa15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 KCNJ15Q99712 375 aa15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 ZDHHC8Q9ULC8 765 aa15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 SF3B6Q9Y3B4 125 aaKnown RBP15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 WIPI2Q9Y4P8 454 aa15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 CACNG2Q9Y698 323 aa15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 SIRT4Q9Y6E7 314 aaPredicted RBP15.26■□□□□ 0.03
SQSTM1-209ENST00000504627 TRBV2A0A0J9YWF9 115 aa15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 ZSCAN5BA6NJL1 495 aa15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 TMEM212A6NML5 194 aa15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 TCF21O43680 179 aa15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 GALP22466 123 aa15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 GADD45AP24522 165 aa15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 NANOS3P60323 173 aaKnown RBP15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 SLC3A1Q07837 685 aa15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 MFGE8Q08431 387 aaPredicted RBP15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 KRTAP27-1Q3LI81 207 aa15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 TMEM255AQ5JRV8 349 aa15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 GDPGP1Q6ZNW5 385 aa15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 CATSPERDQ86XM0 798 aa15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 DGCR14Q96DF8 476 aaKnown RBP15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 C19orf24Q9BVV8 132 aa15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 OCEL1Q9H607 264 aa15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 MSL2Q9HCI7 577 aa15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 TBCCD1Q9NVR7 557 aa15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 FAM206AQ9NX38 181 aa15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 METRNQ9UJH8 293 aa15.25■□□□□ 0.03
SQSTM1-209ENST00000504627 TRAV20A0A0B4J274 112 aa15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 TMEM269A0A1B0GVZ9 245 aa15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 ISPDA4D126 451 aa15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 ACOD1A6NK06 481 aa15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 OR4C45A6NMZ5 311 aa15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 AIREO43918 545 aa15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 HLA-DPB1P04440 258 aa15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 TUBG1P23258 451 aa15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 CX3CR1P49238 355 aa15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 RPS25P62851 125 aaKnown RBP15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 PSG7Q13046 419 aa15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 WDR38Q5JTN6 314 aa15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 CD200R1LQ6Q8B3 271 aa15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 PEG10Q86TG7 708 aaKnown RBP15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 MS4A15Q8N5U1 240 aa15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 GAL3ST1Q99999 423 aa15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 NAA50Q9GZZ1 169 aaKnown RBP15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 COMMD4Q9H0A8 199 aa15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 METTL17Q9H7H0 456 aaPredicted RBP15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 TUBG2Q9NRH3 451 aa15.24■□□□□ 0.03
SQSTM1-209ENST00000504627 M0R135 149 aa15.23■□□□□ 0.03
SQSTM1-209ENST00000504627 RGS9O75916 674 aaPredicted RBP15.23■□□□□ 0.03
SQSTM1-209ENST00000504627 ADH4P08319 380 aa15.23■□□□□ 0.03
SQSTM1-209ENST00000504627 TNFSF4P23510 183 aa15.23■□□□□ 0.03
SQSTM1-209ENST00000504627 KIR3DL2P43630 455 aa15.23■□□□□ 0.03
SQSTM1-209ENST00000504627 TNFAIP6P98066 277 aaPredicted RBP15.23■□□□□ 0.03
SQSTM1-209ENST00000504627 CTF1Q16619 201 aa15.23■□□□□ 0.03
SQSTM1-209ENST00000504627 YIF1BQ5BJH7 314 aa15.23■□□□□ 0.03
SQSTM1-209ENST00000504627 BCL2L15Q5TBC7 163 aa15.23■□□□□ 0.03
SQSTM1-209ENST00000504627 DRAM2Q6UX65 266 aa15.23■□□□□ 0.03
SQSTM1-209ENST00000504627 PRSS35Q8N3Z0 413 aa15.23■□□□□ 0.03
SQSTM1-209ENST00000504627 ZNF283Q8N7M2 679 aa15.23■□□□□ 0.03
SQSTM1-209ENST00000504627 GHSRQ92847 366 aa15.23■□□□□ 0.03
SQSTM1-209ENST00000504627 ZNF799Q96GE5 643 aa15.23■□□□□ 0.03
SQSTM1-209ENST00000504627 TMED9Q9BVK6 235 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms