RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 SNTB1Q13884 538 aaKnown RBP14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 HIST3H3Q16695 136 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 PABPC1L2AQ5JQF8 200 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ELP2Q6IA86 826 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ASCL5Q7RTU5 278 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 CPEB2Q7Z5Q1 589 aaKnown RBP14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 OR5L2Q8NGL0 311 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 OR6X1Q8NH79 312 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 TERB2Q8NHR7 220 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 TMEM230Q96A57 120 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 METTL7AQ9H8H3 244 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 DUX4Q9UBX2 424 aa14.18□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 MED12Q93074 2177 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 E9PLN8 166 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 DNASE2O00115 360 aaPredicted RBP14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 TOX3O15405 576 aaPredicted RBP14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 DKK1O94907 266 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 KCNMB1Q16558 191 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 PAN3Q58A45 887 aaKnown RBP14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 VAX1Q5SQQ9 334 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ZNF385CQ66K41 422 aaPredicted RBP14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 LCN10Q6JVE6 187 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 GUSBP11Q6P575 273 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 PGAP1Q75T13 922 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 NAA40Q86UY6 237 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 BPIFCQ8NFQ6 507 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 RAB3CQ96E17 227 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 FAM71F1Q96KD3 344 aaPredicted RBP14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 OR5B2Q96R09 309 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 RNF126Q9BV68 326 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 TAS2R3Q9NYW6 316 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 GPR132Q9UNW8 380 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 AKAP13Q12802 2813 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 NCOA6Q14686 2063 aaPredicted RBP14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 IGKV1-9A0A0C4DH69 117 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 C5orf63A6NC05 138 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 CEACAM18A8MTB9 384 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ZFAND5O76080 213 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 PSMB6P28072 239 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 CX3CR1P49238 355 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ACY1Q03154 408 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 CRIP3Q6Q6R5 217 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 COMMD2Q86X83 199 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 KCNG3Q8TAE7 436 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 TMEM41AQ96HV5 264 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 OXGR1Q96P68 337 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 BCL2L14Q9BZR8 327 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 C5orf66Q9H5L9 145 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 NDRG3Q9UGV2 375 aa14.17□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 TRBV6-7A0A0A0MS04 114 aa14.16□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 SCRG1O75711 98 aa14.16□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 QDPRP09417 244 aa14.16□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 TAS2R31P59538 309 aa14.16□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 DCDP81605 110 aaKnown RBP14.16□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ZNF124Q15973 351 aa14.16□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ZNF239Q16600 458 aaKnown RBP14.16□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 TMPPEQ6ZT21 453 aa14.16□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 WDSUB1Q8N9V3 476 aa14.16□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 OR5AP2Q8NGF4 316 aa14.16□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ELP5Q8TE02 316 aa14.16□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 SPSB2Q99619 263 aa14.16□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 C13orf42A0A1B0GVH6 325 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 C5orf51A6NDU8 294 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 F5H0A9 414 aaPredicted RBP14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 H7C2Y5 167 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 MFNGO00587 321 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 UNQ6126/PRO20091Q6UXV3 157 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 FAM57BQ71RH2 274 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 INO80EQ8NBZ0 244 aaPredicted RBP14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 TMEM185AQ8NFB2 350 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 OR14K1Q8NGZ2 314 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ARHGAP5-AS1Q96IT6 56 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 OCSTAMPQ9BR26 566 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 TMEM59Q9BXS4 323 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 NMES1Q9C002 83 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 ESRP2Q9H6T0 727 aaKnown RBP14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 CHMP1AQ9HD42 196 aaPredicted RBP14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 BIN3Q9NQY0 253 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 CSAG2Q9Y5P2 127 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 LY6G6EA0A0G2JKS1 128 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 F8VVB4 439 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 F8VWA3 439 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 H0YIZ8 118 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 IFNA4P05014 189 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 PGAM2P15259 253 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 TMEM128Q5BJH2 165 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 OR1S2Q8NGQ3 325 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 PIK3IP1Q96FE7 263 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 U3KQA8 63 aa14.15□□□□□ -0.14
MSH5-SAPCD1-208ENST00000498473 A0A1W2PQM1 296 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 CER1O95813 267 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 ONECUT2O95948 504 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 HCKP08631 526 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 SFTPDP35247 375 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 NPY4RP50391 375 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 PNLIPRP3Q17RR3 467 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 TMEM176BQ3YBM2 270 aaPredicted RBP14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 DMRTC1Q5HYR2 192 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 DOK3Q7L591 496 aa14.14□□□□□ -0.15
MSH5-SAPCD1-208ENST00000498473 TMEM17Q86X19 198 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms