RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 THAP5Q7Z6K1 395 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.57□□□□□ -0.4
USP39-217ENST00000491659 C22orf15Q8WYQ4 148 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 ITFG2Q969R8 447 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 HIST1H2AAQ96QV6 131 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 PKP2Q99959 881 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 TLNRD1Q9H1K6 362 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 PPP1R3EQ9H7J1 279 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 CLN6Q9NWW5 311 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 HAO2Q9NYQ3 351 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 CTSZQ9UBR2 303 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 WARS2Q9UGM6 360 aaKnown RBP12.57□□□□□ -0.4
USP39-217ENST00000491659 NUFIP1Q9UHK0 495 aaKnown RBP12.57□□□□□ -0.4
USP39-217ENST00000491659 STAB1Q9NY15 2570 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 IGHV3OR15-7A0A075B7D8 119 aa12.56□□□□□ -0.4
USP39-217ENST00000491659 KIR2DS1A0A191URI9 304 aa12.56□□□□□ -0.4
USP39-217ENST00000491659 PRR32B1ATL7 298 aa12.56□□□□□ -0.4
USP39-217ENST00000491659 LOC110117498-PIK3R3F6TDL0 507 aa12.56□□□□□ -0.4
USP39-217ENST00000491659 CDIPTO14735 213 aa12.56□□□□□ -0.4
USP39-217ENST00000491659 LHBP01229 141 aa12.56□□□□□ -0.4
USP39-217ENST00000491659 ATP6V1B1P15313 513 aa12.56□□□□□ -0.4
USP39-217ENST00000491659 MUC1P15941 1255 aaPredicted RBP12.56□□□□□ -0.4
USP39-217ENST00000491659 CDC42P60953 191 aa12.56□□□□□ -0.4
USP39-217ENST00000491659 EGR3Q06889 387 aa12.56□□□□□ -0.4
USP39-217ENST00000491659 MFGE8Q08431 387 aaPredicted RBP12.56□□□□□ -0.4
USP39-217ENST00000491659 KPNB1Q14974 876 aaKnown RBP12.56□□□□□ -0.4
USP39-217ENST00000491659 MICBQ29980 383 aa12.56□□□□□ -0.4
USP39-217ENST00000491659 BCL2L15Q5TBC7 163 aa12.56□□□□□ -0.4
USP39-217ENST00000491659 ZNF841Q6ZN19 808 aa12.56□□□□□ -0.4
USP39-217ENST00000491659 FAM90A1Q86YD7 464 aa12.56□□□□□ -0.4
USP39-217ENST00000491659 C11orf53Q8IXP5 236 aa12.56□□□□□ -0.4
USP39-217ENST00000491659 C10orf67Q8IYJ2 551 aa12.56□□□□□ -0.4
USP39-217ENST00000491659 OR51G2Q8NGK0 314 aa12.56□□□□□ -0.4
USP39-217ENST00000491659 OR8J1Q8NGP2 316 aa12.56□□□□□ -0.4
USP39-217ENST00000491659 OR5P3Q8WZ94 311 aa12.56□□□□□ -0.4
USP39-217ENST00000491659 DACT3Q96B18 629 aaPredicted RBP12.56□□□□□ -0.4
USP39-217ENST00000491659 FAM71F1Q96KD3 344 aaPredicted RBP12.56□□□□□ -0.4
USP39-217ENST00000491659 GPR84Q9NQS5 396 aa12.56□□□□□ -0.4
USP39-217ENST00000491659 TRAV40A0A0B4J280 105 aa12.55□□□□□ -0.4
USP39-217ENST00000491659 C22orf46C9J442 243 aa12.55□□□□□ -0.4
USP39-217ENST00000491659 TMPRSS2O15393 492 aa12.55□□□□□ -0.4
USP39-217ENST00000491659 MTRF1O75570 445 aaKnown RBP12.55□□□□□ -0.4
USP39-217ENST00000491659 HTR1FP30939 366 aa12.55□□□□□ -0.4
USP39-217ENST00000491659 POLR2IP36954 125 aaKnown RBP12.55□□□□□ -0.4
USP39-217ENST00000491659 ACTG1P63261 375 aa12.55□□□□□ -0.4
USP39-217ENST00000491659 RIPPLY1Q0D2K3 151 aa12.55□□□□□ -0.4
USP39-217ENST00000491659 KLF17Q5JT82 389 aaPredicted RBP12.55□□□□□ -0.4
USP39-217ENST00000491659 ZBTB37Q5TC79 503 aa12.55□□□□□ -0.4
USP39-217ENST00000491659 OR10Z1Q8NGY1 313 aa12.55□□□□□ -0.4
USP39-217ENST00000491659 OR51E1Q8TCB6 317 aa12.55□□□□□ -0.4
USP39-217ENST00000491659 HPSE2Q8WWQ2 592 aa12.55□□□□□ -0.4
USP39-217ENST00000491659 RFKQ969G6 155 aa12.55□□□□□ -0.4
USP39-217ENST00000491659 UPRTQ96BW1 309 aa12.55□□□□□ -0.4
USP39-217ENST00000491659 RNF170Q96K19 258 aa12.55□□□□□ -0.4
USP39-217ENST00000491659 APOL4Q9BPW4 351 aa12.55□□□□□ -0.4
USP39-217ENST00000491659 MS4A7Q9GZW8 240 aaPredicted RBP12.55□□□□□ -0.4
USP39-217ENST00000491659 IMPAD1Q9NX62 359 aa12.55□□□□□ -0.4
USP39-217ENST00000491659 ZNF69Q9UC07 566 aa12.55□□□□□ -0.4
USP39-217ENST00000491659 R4GMQ9 66 aa12.55□□□□□ -0.4
USP39-217ENST00000491659 SRRM5B3KS81 715 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 H3BNX3 289 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 EI24O14681 340 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 IGLV3-1P01715 115 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 KRT8P05787 483 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 ATP6V1E1P36543 226 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 TMED1Q13445 227 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 SLC36A1Q7Z2H8 476 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 SIGLECL1Q8N7X8 197 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 PNLDC1Q8NA58 520 aaKnown RBP12.54□□□□□ -0.4
USP39-217ENST00000491659 SCCPDHQ8NBX0 429 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 FAM216AQ8WUB2 273 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 RPL3LQ92901 407 aaKnown RBP12.54□□□□□ -0.4
USP39-217ENST00000491659 C12orf43Q96C57 262 aaKnown RBP12.54□□□□□ -0.4
USP39-217ENST00000491659 TBX5Q99593 518 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 SMURF1Q9HCE7 757 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 USE1Q9NZ43 259 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 KAAG1Q9UBP8 84 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 DNAJB11Q9UBS4 358 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 ENPP5Q9UJA9 477 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 OR52A1Q9UKL2 312 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 PIGLQ9Y2B2 252 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 SNX5Q9Y5X3 404 aa12.54□□□□□ -0.4
USP39-217ENST00000491659 IGHV3OR16-10A0A075B7F0 116 aa12.53□□□□□ -0.4
USP39-217ENST00000491659 NKX6-3A6NJ46 265 aa12.53□□□□□ -0.4
USP39-217ENST00000491659 OR5B21A6NL26 309 aa12.53□□□□□ -0.4
USP39-217ENST00000491659 DVL1O14640 695 aa12.53□□□□□ -0.4
USP39-217ENST00000491659 TNFRSF13BO14836 293 aaPredicted RBP12.53□□□□□ -0.4
USP39-217ENST00000491659 SRSF10O75494 262 aaKnown RBP12.53□□□□□ -0.4
USP39-217ENST00000491659 DHRS3O75911 302 aa12.53□□□□□ -0.4
USP39-217ENST00000491659 ECDO95905 644 aaPredicted RBP12.53□□□□□ -0.4
USP39-217ENST00000491659 TTRP02766 147 aa12.53□□□□□ -0.4
USP39-217ENST00000491659 ALPLP05186 524 aa12.53□□□□□ -0.4
USP39-217ENST00000491659 LIPFP07098 398 aa12.53□□□□□ -0.4
USP39-217ENST00000491659 OR2T7P0C7T2 308 aa12.53□□□□□ -0.4
USP39-217ENST00000491659 IGHV4-38-2P0DP08 117 aa12.53□□□□□ -0.4
USP39-217ENST00000491659 FAHP16930 419 aa12.53□□□□□ -0.4
USP39-217ENST00000491659 CFHR2P36980 270 aa12.53□□□□□ -0.4
USP39-217ENST00000491659 ALDH3A2P51648 485 aa12.53□□□□□ -0.4
USP39-217ENST00000491659 GPM6AP51674 278 aa12.53□□□□□ -0.4
USP39-217ENST00000491659 GMFBP60983 142 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms