RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 SPSB1Q96BD6 273 aa11.84□□□□□ -0.51
C9orf3-221ENST00000489562 CPNE2Q96FN4 548 aaPredicted RBP11.84□□□□□ -0.51
C9orf3-221ENST00000489562 BCL7BQ9BQE9 202 aa11.84□□□□□ -0.51
C9orf3-221ENST00000489562 CHCHD6Q9BRQ6 235 aa11.84□□□□□ -0.51
C9orf3-221ENST00000489562 ADAT1Q9BUB4 502 aaKnown RBP11.84□□□□□ -0.51
C9orf3-221ENST00000489562 SLITRK2Q9H156 845 aa11.84□□□□□ -0.51
C9orf3-221ENST00000489562 OR51E2Q9H255 320 aa11.84□□□□□ -0.51
C9orf3-221ENST00000489562 TCF7L1Q9HCS4 588 aa11.84□□□□□ -0.51
C9orf3-221ENST00000489562 TXNL4BQ9NX01 149 aaKnown RBP11.84□□□□□ -0.51
C9orf3-221ENST00000489562 NKIRAS2Q9NYR9 191 aa11.84□□□□□ -0.51
C9orf3-221ENST00000489562 EDARQ9UNE0 448 aa11.84□□□□□ -0.51
C9orf3-221ENST00000489562 CACNA1DQ01668 2161 aa11.84□□□□□ -0.51
C9orf3-221ENST00000489562 LOC100506127A0A0U1RQW1 187 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 MEGF11A6BM72 1044 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 ZSCAN5BA6NJL1 495 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 OR5B21A6NL26 309 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 ZNF850A8MQ14 1090 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 C17orf100A8MU93 164 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 PIN1P1O15428 100 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 SULT1B1O43704 296 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 NOL3O60936 208 aaKnown RBP11.83□□□□□ -0.52
C9orf3-221ENST00000489562 LILRA1O75019 489 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 ERCC1P07992 297 aaPredicted RBP11.83□□□□□ -0.52
C9orf3-221ENST00000489562 SOD3P08294 240 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 OCMP0CE72 109 aaPredicted RBP11.83□□□□□ -0.52
C9orf3-221ENST00000489562 IGFBP3P17936 291 aaPredicted RBP11.83□□□□□ -0.52
C9orf3-221ENST00000489562 ATF1P18846 271 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 RAB3AP20336 220 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 PRKACBP22694 351 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 MYL9P24844 172 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 ALDH3B1P43353 468 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 MAGEB1P43366 347 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 INSL4Q14641 139 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 CEACAM21Q3KPI0 293 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 FAM209AQ5JX71 171 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 PLCXD3Q63HM9 321 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 C11orf71Q6IPW1 123 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 ZNF529Q6P280 563 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 MOB3CQ70IA8 216 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 SATL1Q86VE3 508 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 DNAAF1Q8NEP3 725 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 OR1M1Q8NGA1 313 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 OR5A2Q8NGI9 324 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 OR13C9Q8NGT0 318 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 ITPKCQ96DU7 683 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 ELMOD3Q96FG2 381 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 KCTD7Q96MP8 289 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 MICU1Q9BPX6 476 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 RTL8AQ9BWD3 113 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 MSL2Q9HCI7 577 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 TMEM138Q9NPI0 162 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 C14orf119Q9NWQ9 140 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 SLC7A11Q9UPY5 501 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 LAMP3Q9UQV4 416 aa11.83□□□□□ -0.52
C9orf3-221ENST00000489562 AKAP6Q13023 2319 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 TANC2Q9HCD6 1990 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 TRAV1-2A0A0B4J238 106 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 A6NIN4 97 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 TMEM210A6NLX4 147 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 MAGEB3O15480 346 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 MLNRO43193 412 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 GABARAPO95166 117 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 CD8AP01732 235 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 CD55P08174 381 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 SRMP19623 302 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 CALRP27797 417 aaKnown RBP11.82□□□□□ -0.52
C9orf3-221ENST00000489562 SRP9P49458 86 aaKnown RBP11.82□□□□□ -0.52
C9orf3-221ENST00000489562 TMBIM6P55061 237 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 GNG3P63215 75 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 UBE2V2Q15819 145 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 GPR107Q5VW38 600 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 C22orf42Q6IC83 251 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 CELF2-AS1Q8N7Q2 184 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 NKAIN3Q8N8D7 197 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 OR2Z1Q8NG97 314 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 ZNF420Q8TAQ5 688 aaPredicted RBP11.82□□□□□ -0.52
C9orf3-221ENST00000489562 RAB2BQ8WUD1 216 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 OR5P3Q8WZ94 311 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 CXXC4Q9H2H0 198 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 GPR173Q9NS66 373 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 SNTG1Q9NSN8 517 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 TAS2R4Q9NYW5 299 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 NDUFA13Q9P0J0 144 aa11.82□□□□□ -0.52
C9orf3-221ENST00000489562 TRAV8-7A0A075B6U6 113 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 SMIM31A0A1B0GVY4 71 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 A0A1W2PPK0 400 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 H7C417 338 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 PDCD5O14737 125 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 SPRY3O43610 288 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 IGHV1-46P01743 117 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 ALDOBP05062 364 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 NAT2P11245 290 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 AZGP1P25311 298 aaKnown RBP11.81□□□□□ -0.52
C9orf3-221ENST00000489562 BDKRB2P30411 391 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 CD200P41217 278 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 MTNR1BP49286 362 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 FUT6P51993 359 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 TESK1Q15569 626 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 CEP78Q5JTW2 689 aa11.81□□□□□ -0.52
C9orf3-221ENST00000489562 FAM27D1Q5T7N8 215 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms