RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 MYCNOSP40205 109 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 RFC3P40938 356 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 SLC1A2P43004 574 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 PPICP45877 212 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 TGM4P49221 684 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 IFITM3Q01628 133 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 CUL2Q13617 745 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 TMEM53Q6P2H8 277 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 EIF3MQ7L2H7 374 aaKnown RBP1.54□□□□□ -2.16
PTPN4-212ENST00000488896 LUZP2Q86TE4 346 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 OFCC1Q8IZS5 231 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 ORMDL3Q8N138 153 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 JAGN1Q8N5M9 183 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 DRAM1Q8N682 238 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 UBAC2Q8NBM4 344 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 CCDC148Q8NFR7 591 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 OR4C13Q8NGP0 309 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 OR52N1Q8NH53 320 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 ZNF649Q9BS31 505 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 TOLLIPQ9H0E2 274 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 CCNB1IP1Q9NPC3 277 aa1.54□□□□□ -2.16
PTPN4-212ENST00000488896 ANKRD65E5RJM6 399 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 BCKDKO14874 412 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 RAD1O60671 282 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 SLC19A2O60779 497 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 FCN3O75636 299 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 NRASP01111 189 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 HRASP01112 189 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 KRASP01116 189 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 IFNW1P05000 195 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 IFI30P13284 250 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 CBR1P16152 277 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 FUSP35637 526 aaKnown RBP eCLIP1.53□□□□□ -2.16
PTPN4-212ENST00000488896 KLF3P57682 345 aaPredicted RBP1.53□□□□□ -2.16
PTPN4-212ENST00000488896 BZW1Q7L1Q6 419 aaKnown RBP1.53□□□□□ -2.16
PTPN4-212ENST00000488896 BBS7Q8IWZ6 715 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 VKORC1L1Q8N0U8 176 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 BPIFCQ8NFQ6 507 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 OR51F2Q8NH61 342 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 ENKURQ8TC29 256 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 DCAKDQ8WVC6 231 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 GSDMAQ96QA5 445 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 PDCD1LG2Q9BQ51 273 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 BPIFA3Q9BQP9 254 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 ABCG5Q9H222 651 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 PIGUQ9H490 435 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 PLEKHF2Q9H8W4 249 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 C20orf96Q9NUD7 363 aaPredicted RBP1.53□□□□□ -2.16
PTPN4-212ENST00000488896 RBFOX1Q9NWB1 397 aaKnown RBP1.53□□□□□ -2.16
PTPN4-212ENST00000488896 RAB20Q9NX57 234 aa1.53□□□□□ -2.16
PTPN4-212ENST00000488896 NSD2O96028 1365 aa1.52□□□□□ -2.17
PTPN4-212ENST00000488896 MROH7Q68CQ1 1323 aa1.52□□□□□ -2.17
PTPN4-212ENST00000488896 KCNE1BA0A087WTH5 132 aa1.52□□□□□ -2.17
PTPN4-212ENST00000488896 ISPDA4D126 451 aa1.52□□□□□ -2.17
PTPN4-212ENST00000488896 GOLGA6L4A6NEF3 574 aa1.52□□□□□ -2.17
PTPN4-212ENST00000488896 TRIM64CA6NLI5 447 aa1.52□□□□□ -2.17
PTPN4-212ENST00000488896 ERI3O43414 337 aaKnown RBP1.52□□□□□ -2.17
PTPN4-212ENST00000488896 DNAJB6O75190 326 aa1.52□□□□□ -2.17
PTPN4-212ENST00000488896 HLA-HP01893 362 aa1.52□□□□□ -2.17
PTPN4-212ENST00000488896 MAS1P04201 325 aa1.52□□□□□ -2.17
PTPN4-212ENST00000488896 NAB1Q13506 487 aa1.52□□□□□ -2.17
PTPN4-212ENST00000488896 TPBGQ13641 420 aa1.52□□□□□ -2.17
PTPN4-212ENST00000488896 GABRA6Q16445 453 aa1.52□□□□□ -2.17
PTPN4-212ENST00000488896 LIN9Q5TKA1 542 aa1.52□□□□□ -2.17
PTPN4-212ENST00000488896 ZNF470Q6ECI4 717 aa1.52□□□□□ -2.17
PTPN4-212ENST00000488896 SSX9Q7RTT3 188 aa1.52□□□□□ -2.17
PTPN4-212ENST00000488896 TSEN15Q8WW01 171 aaKnown RBP1.52□□□□□ -2.17
PTPN4-212ENST00000488896 RAB1CQ92928 201 aa1.52□□□□□ -2.17
PTPN4-212ENST00000488896 C11orf70Q9BRQ4 267 aa1.52□□□□□ -2.17
PTPN4-212ENST00000488896 TBC1D24Q9ULP9 559 aa1.52□□□□□ -2.17
PTPN4-212ENST00000488896 PRR14LQ5THK1 2151 aa1.51□□□□□ -2.17
PTPN4-212ENST00000488896 A0A0A6YYD5 115 aa1.51□□□□□ -2.17
PTPN4-212ENST00000488896 D6RAR5 112 aa1.51□□□□□ -2.17
PTPN4-212ENST00000488896 CACNG3O60359 315 aa1.51□□□□□ -2.17
PTPN4-212ENST00000488896 TDP2O95551 362 aa1.51□□□□□ -2.17
PTPN4-212ENST00000488896 CPSF4O95639 269 aaKnown RBP1.51□□□□□ -2.17
PTPN4-212ENST00000488896 TRBV12-3P01733 135 aa1.51□□□□□ -2.17
PTPN4-212ENST00000488896 GSTM3P21266 225 aa1.51□□□□□ -2.17
PTPN4-212ENST00000488896 MYL9P24844 172 aa1.51□□□□□ -2.17
PTPN4-212ENST00000488896 MPIP34949 423 aa1.51□□□□□ -2.17
PTPN4-212ENST00000488896 IL5RAQ01344 420 aa1.51□□□□□ -2.17
PTPN4-212ENST00000488896 IRF8Q02556 426 aa1.51□□□□□ -2.17
PTPN4-212ENST00000488896 KDM4DQ6B0I6 523 aa1.51□□□□□ -2.17
PTPN4-212ENST00000488896 WDR82Q6UXN9 313 aa1.51□□□□□ -2.17
PTPN4-212ENST00000488896 SPNS3Q6ZMD2 512 aa1.51□□□□□ -2.17
PTPN4-212ENST00000488896 TMPRSS11AQ6ZMR5 421 aa1.51□□□□□ -2.17
PTPN4-212ENST00000488896 SLC25A29Q8N8R3 303 aa1.51□□□□□ -2.17
PTPN4-212ENST00000488896 RBPMSQ93062 196 aaKnown RBP1.51□□□□□ -2.17
PTPN4-212ENST00000488896 MYCBPQ99417 103 aaPredicted RBP1.51□□□□□ -2.17
PTPN4-212ENST00000488896 CALN1Q9BXU9 219 aa1.51□□□□□ -2.17
PTPN4-212ENST00000488896 ELOVL6Q9H5J4 265 aa1.51□□□□□ -2.17
PTPN4-212ENST00000488896 MYEF2Q9P2K5 600 aaKnown RBP1.51□□□□□ -2.17
PTPN4-212ENST00000488896 SAR1BQ9Y6B6 198 aa1.51□□□□□ -2.17
PTPN4-212ENST00000488896 CCL15-CCL14A0A0B4J2E2 113 aa1.5□□□□□ -2.17
PTPN4-212ENST00000488896 IGHV1-46P01743 117 aa1.5□□□□□ -2.17
PTPN4-212ENST00000488896 IGHG2P01859 326 aa1.5□□□□□ -2.17
PTPN4-212ENST00000488896 KRT16P08779 473 aa1.5□□□□□ -2.17
PTPN4-212ENST00000488896 UBCP0CG48 685 aaKnown RBP1.5□□□□□ -2.17
PTPN4-212ENST00000488896 OR8G3PP0DMU2 310 aa1.5□□□□□ -2.17
PTPN4-212ENST00000488896 PCK1P35558 622 aa1.5□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms