RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 OR10Z1Q8NGY1 313 aa13.9□□□□□ -0.18
VIM-204ENST00000478746 ANGPTL6Q8NI99 470 aa13.9□□□□□ -0.18
VIM-204ENST00000478746 OR5M11Q96RB7 305 aa13.9□□□□□ -0.18
VIM-204ENST00000478746 KCNJ15Q99712 375 aa13.9□□□□□ -0.18
VIM-204ENST00000478746 IFT27Q9BW83 186 aa13.9□□□□□ -0.18
VIM-204ENST00000478746 PRSS22Q9GZN4 317 aa13.9□□□□□ -0.18
VIM-204ENST00000478746 OR52D1Q9H346 318 aa13.9□□□□□ -0.18
VIM-204ENST00000478746 PPP1R3EQ9H7J1 279 aa13.9□□□□□ -0.18
VIM-204ENST00000478746 HEXA-AS1Q9H8Q6 139 aa13.9□□□□□ -0.18
VIM-204ENST00000478746 SAR1AQ9NR31 198 aa13.9□□□□□ -0.18
VIM-204ENST00000478746 CMTM6Q9NX76 183 aa13.9□□□□□ -0.18
VIM-204ENST00000478746 GMPR2Q9P2T1 348 aaKnown RBP13.9□□□□□ -0.18
VIM-204ENST00000478746 TRBV23-1A0A0A0MS06 115 aa13.89□□□□□ -0.19
VIM-204ENST00000478746 TRBV4-1A0A0J9YWV2 114 aa13.89□□□□□ -0.19
VIM-204ENST00000478746 GLCEO94923 617 aa13.89□□□□□ -0.19
VIM-204ENST00000478746 SERPINA1P01009 418 aa13.89□□□□□ -0.19
VIM-204ENST00000478746 PYCR1P32322 319 aa13.89□□□□□ -0.19
VIM-204ENST00000478746 GNALP38405 381 aa13.89□□□□□ -0.19
VIM-204ENST00000478746 GABRA2P47869 451 aa13.89□□□□□ -0.19
VIM-204ENST00000478746 KRTAP10-11P60412 298 aa13.89□□□□□ -0.19
VIM-204ENST00000478746 LIPEQ05469 1076 aa13.89□□□□□ -0.19
VIM-204ENST00000478746 ARSJQ5FYB0 599 aaPredicted RBP13.89□□□□□ -0.19
VIM-204ENST00000478746 ARPINQ7Z6K5 226 aa13.89□□□□□ -0.19
VIM-204ENST00000478746 ZDHHC21Q8IVQ6 265 aa13.89□□□□□ -0.19
VIM-204ENST00000478746 MKXQ8IYA7 352 aa13.89□□□□□ -0.19
VIM-204ENST00000478746 FAM185AQ8N0U4 392 aa13.89□□□□□ -0.19
VIM-204ENST00000478746 FANK1Q8TC84 345 aa13.89□□□□□ -0.19
VIM-204ENST00000478746 MICU1Q9BPX6 476 aa13.89□□□□□ -0.19
VIM-204ENST00000478746 CDCA4Q9BXL8 241 aa13.89□□□□□ -0.19
VIM-204ENST00000478746 WNT10AQ9GZT5 417 aa13.89□□□□□ -0.19
VIM-204ENST00000478746 ELL3Q9HB65 397 aaPredicted RBP13.89□□□□□ -0.19
VIM-204ENST00000478746 TVP23AA6NH52 213 aa13.88□□□□□ -0.19
VIM-204ENST00000478746 AKR7A2O43488 359 aa13.88□□□□□ -0.19
VIM-204ENST00000478746 IDH3BO43837 385 aa13.88□□□□□ -0.19
VIM-204ENST00000478746 PF4V1P10720 104 aa13.88□□□□□ -0.19
VIM-204ENST00000478746 RAB13P51153 203 aa13.88□□□□□ -0.19
VIM-204ENST00000478746 SLC35A2P78381 396 aa13.88□□□□□ -0.19
VIM-204ENST00000478746 MXRA7P84157 204 aa13.88□□□□□ -0.19
VIM-204ENST00000478746 CNN3Q15417 329 aaKnown RBP13.88□□□□□ -0.19
VIM-204ENST00000478746 TIGD6Q17RP2 521 aa13.88□□□□□ -0.19
VIM-204ENST00000478746 OR52J3Q8NH60 311 aa13.88□□□□□ -0.19
VIM-204ENST00000478746 RPL3LQ92901 407 aaKnown RBP13.88□□□□□ -0.19
VIM-204ENST00000478746 SGK3Q96BR1 496 aa13.88□□□□□ -0.19
VIM-204ENST00000478746 SLAMF6Q96DU3 332 aa13.88□□□□□ -0.19
VIM-204ENST00000478746 REEP6Q96HR9 211 aa13.88□□□□□ -0.19
VIM-204ENST00000478746 B9D2Q9BPU9 175 aa13.88□□□□□ -0.19
VIM-204ENST00000478746 PAPOLGQ9BWT3 736 aaKnown RBP13.88□□□□□ -0.19
VIM-204ENST00000478746 FAM107BQ9H098 131 aa13.88□□□□□ -0.19
VIM-204ENST00000478746 RHBDD3Q9Y3P4 386 aa13.88□□□□□ -0.19
VIM-204ENST00000478746 ANXA2P2A6NMY6 339 aa13.87□□□□□ -0.19
VIM-204ENST00000478746 OR2AT4A6NND4 320 aa13.87□□□□□ -0.19
VIM-204ENST00000478746 RHCEP18577 417 aa13.87□□□□□ -0.19
VIM-204ENST00000478746 IL5RAQ01344 420 aa13.87□□□□□ -0.19
VIM-204ENST00000478746 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.87□□□□□ -0.19
VIM-204ENST00000478746 SLC35F1Q5T1Q4 408 aa13.87□□□□□ -0.19
VIM-204ENST00000478746 SLC15A3Q8IY34 581 aa13.87□□□□□ -0.19
VIM-204ENST00000478746 ZNRF1Q8ND25 227 aa13.87□□□□□ -0.19
VIM-204ENST00000478746 PROKR2Q8NFJ6 384 aa13.87□□□□□ -0.19
VIM-204ENST00000478746 RCN3Q96D15 328 aa13.87□□□□□ -0.19
VIM-204ENST00000478746 RCC1LQ96I51 464 aaKnown RBP13.87□□□□□ -0.19
VIM-204ENST00000478746 RTL8AQ9BWD3 113 aa13.87□□□□□ -0.19
VIM-204ENST00000478746 NDUFAF4Q9P032 175 aa13.87□□□□□ -0.19
VIM-204ENST00000478746 NLKQ9UBE8 527 aa13.87□□□□□ -0.19
VIM-204ENST00000478746 TCF19Q9Y242 345 aa13.87□□□□□ -0.19
VIM-204ENST00000478746 VGLL3A8MV65 326 aa13.86□□□□□ -0.19
VIM-204ENST00000478746 E9PQ18 207 aa13.86□□□□□ -0.19
VIM-204ENST00000478746 PF4P02776 101 aa13.86□□□□□ -0.19
VIM-204ENST00000478746 ANXA2P07355 339 aaKnown RBP13.86□□□□□ -0.19
VIM-204ENST00000478746 PSKH1P11801 424 aa13.86□□□□□ -0.19
VIM-204ENST00000478746 GSK3AP49840 483 aa13.86□□□□□ -0.19
VIM-204ENST00000478746 CD83Q01151 205 aa13.86□□□□□ -0.19
VIM-204ENST00000478746 SPIBQ01892 262 aa13.86□□□□□ -0.19
VIM-204ENST00000478746 SF3A3Q12874 501 aaKnown RBP eCLIP13.86□□□□□ -0.19
VIM-204ENST00000478746 PLA1AQ53H76 456 aa13.86□□□□□ -0.19
VIM-204ENST00000478746 CGB2Q6NT52 195 aa13.86□□□□□ -0.19
VIM-204ENST00000478746 TMEM219Q86XT9 240 aa13.86□□□□□ -0.19
VIM-204ENST00000478746 CSNK2A3Q8NEV1 391 aa13.86□□□□□ -0.19
VIM-204ENST00000478746 TMEM185AQ8NFB2 350 aa13.86□□□□□ -0.19
VIM-204ENST00000478746 OR5AU1Q8NGC0 362 aa13.86□□□□□ -0.19
VIM-204ENST00000478746 SP140LQ9H930 580 aa13.86□□□□□ -0.19
VIM-204ENST00000478746 ABCB10Q9NRK6 738 aa13.86□□□□□ -0.19
VIM-204ENST00000478746 PITPNC1Q9UKF7 332 aa13.86□□□□□ -0.19
VIM-204ENST00000478746 hCG_38984A0A1B0GV85 526 aa13.85□□□□□ -0.19
VIM-204ENST00000478746 A0A1W2PPH5 198 aa13.85□□□□□ -0.19
VIM-204ENST00000478746 A6NDX4 124 aa13.85□□□□□ -0.19
VIM-204ENST00000478746 TMEM210A6NLX4 147 aa13.85□□□□□ -0.19
VIM-204ENST00000478746 ZNF878C9JN71 531 aa13.85□□□□□ -0.19
VIM-204ENST00000478746 DUS4LO95620 317 aaKnown RBP13.85□□□□□ -0.19
VIM-204ENST00000478746 SPARCP09486 303 aa13.85□□□□□ -0.19
VIM-204ENST00000478746 CFL1P23528 166 aaKnown RBP13.85□□□□□ -0.19
VIM-204ENST00000478746 COX7A1P24310 79 aa13.85□□□□□ -0.19
VIM-204ENST00000478746 VDAC2P45880 294 aaPredicted RBP13.85□□□□□ -0.19
VIM-204ENST00000478746 SLC15A1P46059 708 aa13.85□□□□□ -0.19
VIM-204ENST00000478746 CX3CR1P49238 355 aa13.85□□□□□ -0.19
VIM-204ENST00000478746 KRT72Q14CN4 511 aa13.85□□□□□ -0.19
VIM-204ENST00000478746 SNCBQ16143 134 aa13.85□□□□□ -0.19
VIM-204ENST00000478746 LYPD4Q6UWN0 246 aa13.85□□□□□ -0.19
VIM-204ENST00000478746 KCTD8Q6ZWB6 473 aa13.85□□□□□ -0.19
VIM-204ENST00000478746 LHFPL4Q7Z7J7 247 aa13.85□□□□□ -0.19
VIM-204ENST00000478746 OR51L1Q8NGJ5 315 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms