RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 OR4C12Q96R67 309 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 FAM110AQ9BQ89 295 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 ZNF426Q9BUY5 554 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 TLNRD1Q9H1K6 362 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 C1orf21Q9H246 121 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 RABEP2Q9H5N1 569 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 TBC1D23Q9NUY8 699 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 DNAJB9Q9UBS3 223 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 TNCP24821 2201 aa6.25□□□□□ -1.41
USP54-211ENST00000474929 TEX13CA0A0J9YWL9 993 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 HTR3EA5X5Y0 456 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 TMEM210A6NLX4 147 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 OR2AT4A6NND4 320 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 TMEM233B4DJY2 109 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 SLC1A7O00341 560 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 TRIM13O60858 407 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 SERPINB7O75635 380 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 OR7A10O76100 309 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 NDUFB8O95169 186 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 MT-ND1P03886 318 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 LCATP04180 440 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 ACSM4P0C7M7 580 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 ZCCHC18P0CG32 403 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 FAM106CPP0CH98 169 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 ATF4P18848 351 aaPredicted RBP6.24□□□□□ -1.41
USP54-211ENST00000474929 ALDH3A1P30838 453 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 CEACAM3P40198 252 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 AQP2P41181 271 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 MNDAP41218 407 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 GABRA2P47869 451 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 TCTAP57738 103 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 ELF3P78545 371 aaPredicted RBP6.24□□□□□ -1.41
USP54-211ENST00000474929 RUNX1Q01196 453 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 GPR50Q13585 617 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 TMEM200BQ69YZ2 307 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 ACP7Q6ZNF0 438 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 CFAP77Q6ZQR2 320 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 Q8N1X5 172 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 MREGQ8N565 214 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 OR5T2Q8NGG2 359 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 LIPHQ8WWY8 451 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 SDSLQ96GA7 329 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 APOPT1Q96IL0 206 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 NOL4LQ96MY1 436 aaPredicted RBP6.24□□□□□ -1.41
USP54-211ENST00000474929 MCHR1Q99705 422 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 TMEM109Q9BVC6 243 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 NDEL1Q9GZM8 345 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 PAIP1Q9H074 479 aaKnown RBP6.24□□□□□ -1.41
USP54-211ENST00000474929 OR51J1Q9H342 316 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 ELL3Q9HB65 397 aaPredicted RBP6.24□□□□□ -1.41
USP54-211ENST00000474929 ACTR3BQ9P1U1 418 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 LGALS13Q9UHV8 139 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 STUB1Q9UNE7 303 aa6.24□□□□□ -1.41
USP54-211ENST00000474929 DYNC1H1Q14204 4646 aaKnown RBP6.24□□□□□ -1.41
USP54-211ENST00000474929 TRAPPC13A5PLN9 417 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 PRSS29PA6NIE9 313 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 ANXA2P2A6NMY6 339 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 XKRYO14609 159 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 RER1O15258 196 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 CNIH1O95406 144 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 IGHG2P01859 326 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 CHRNGP07510 517 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 TSPAN19P0C672 248 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 OR5H8P0DN80 308 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 BMP2P12643 396 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 CTLA4P16410 223 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 CCL3L1P16619 93 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 FUT1P19526 365 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 RBM34P42696 430 aaKnown RBP6.23□□□□□ -1.41
USP54-211ENST00000474929 TPTEP56180 551 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 CSNK2BP67870 215 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 PITPNAQ00169 270 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 PCLAFQ15004 111 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 ANKDD1AQ495B1 522 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 THAP5Q7Z6K1 395 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 ZNF561Q8N587 486 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 ZNRF1Q8ND25 227 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 OR1N2Q8NGR9 330 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 ZNF596Q8TC21 504 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 AGR3Q8TD06 166 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 TMEM106AQ96A25 262 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 SGTBQ96EQ0 304 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 OR52E6Q96RD3 313 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 ZBTB18Q99592 522 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 MICU1Q9BPX6 476 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 RTL8AQ9BWD3 113 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 CLEC7AQ9BXN2 247 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 TPT1P8Q9HAU6 139 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 RETNQ9HD89 108 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 PCDHB16Q9NRJ7 776 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 SNTG1Q9NSN8 517 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 DPM3Q9P2X0 92 aa6.23□□□□□ -1.41
USP54-211ENST00000474929 HSPG2P98160 4391 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 SHISA3A0PJX4 238 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 OR6C68A6NDL8 312 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 SH2D7A6NKC9 451 aaPredicted RBP6.22□□□□□ -1.41
USP54-211ENST00000474929 OOSP1A8MZH6 123 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 F5H5K5 113 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 H0Y980 276 aa6.22□□□□□ -1.41
USP54-211ENST00000474929 CDIPTO14735 213 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms