RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 MBOAT2Q6ZWT7 520 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 SLC47A2Q86VL8 602 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 CMTM1Q8IZ96 169 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 C8orf31Q8N9H6 132 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 OR51G2Q8NGK0 314 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 NEU4Q8WWR8 484 aaPredicted RBP4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 RAD54LQ92698 747 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 PTX4Q96A99 478 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 MALSU1Q96EH3 234 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 CDKN2AIPNLQ96HQ2 116 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 SLC35E1Q96K37 410 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 ACTR3CQ9C0K3 210 aaPredicted RBP4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 NXF5Q9H1B4 397 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 CDC42EP4Q9H3Q1 356 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 IL17CQ9P0M4 197 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 LGALS13Q9UHV8 139 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 ST3GAL6Q9Y274 331 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 RAP2CQ9Y3L5 183 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 BAHCC1Q9P281 2608 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 CACNA1GO43497 2377 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 CACNA1HO95180 2353 aa4.21□□□□□ -1.74
CCDC88A-209ENST00000456975 MYO10Q9HD67 2058 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 TCHHQ07283 1943 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 TRIOO75962 3097 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 A0A087WUJ7 227 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 A0A1W2PR80 420 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 SHISA7A6NL88 538 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 C3orf70A6NLC5 250 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 FTCDNL1E5RQL4 147 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 J3QLI3 93 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 P2RX6O15547 441 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 TPST2O60704 377 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 TSPAN15O95858 294 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 ANKRD34CP0C6C1 535 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 UBBP0CG47 229 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 MPZP25189 248 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 RFX2P48378 723 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 ATP1B3P54709 279 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 MYL5Q02045 173 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 ST3GAL4Q11206 333 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 CTF1Q16619 201 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 GLYR1Q49A26 553 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 SYTL3Q4VX76 610 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 LY6G6FQ5SQ64 297 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 SERTAD4-AS1Q5TG53 156 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 FAM71F2Q6NXP2 309 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 CD200R1LQ6Q8B3 271 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 LRRC55Q6ZSA7 311 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 COX15Q7KZN9 410 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 C1QL4Q86Z23 238 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 STHQ8IWL8 128 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF676Q8N7Q3 588 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 NPEPL1Q8NDH3 523 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 OR7G2Q8NG99 324 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 OR10S1Q8NGN2 331 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 OR10G9Q8NGN4 311 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 OR52I2Q8NH67 350 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 CASTOR1Q8WTX7 329 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 ASB13Q8WXK3 278 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 ISOC2Q96AB3 205 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 FLYWCH2Q96CP2 140 aaKnown RBP4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 ORAI1Q96D31 301 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 PYURFQ96I23 114 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 GNRHR2Q96P88 292 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 RCHY1Q96PM5 261 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 OR5B12Q96R08 314 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 PSMB7Q99436 277 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 RSPO3Q9BXY4 272 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 CIPCQ9C0C6 399 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 OR2J1Q9GZK6 312 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 SLIRPQ9GZT3 109 aaKnown RBP4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 SPRTNQ9H040 489 aaPredicted RBP4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 CBLN4Q9NTU7 201 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 KLRF1Q9NZS2 232 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 LOXHD1Q8IVV2 1947 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 EVPLQ92817 2033 aa4.2□□□□□ -1.74
CCDC88A-209ENST00000456975 KBTBD11-OT1A0A1B0GTJ5 212 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 PNMA8CA0A1B0GUJ8 204 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 A0A1B0GW55 424 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 A0A1W2PP18 115 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 A0A1W2PS29 197 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 PSMB11A5LHX3 300 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 ANKUB1A6NFN9 424 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 VWC2LB2RUY7 222 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 DVL1O14640 695 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 RBFOX2O43251 390 aaKnown RBP eCLIP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 SNAPC5O75971 98 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 YIF1AO95070 293 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 RAB36O95755 333 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 DCNP07585 359 aaKnown RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 UMODP07911 640 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 RHOCP08134 193 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 HIST1H2AGP0C0S8 130 aaPredicted RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 DUX4L2P0CJ85 424 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 DUX4L3P0CJ86 424 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 DUX4L5P0CJ88 424 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 DUX4L6P0CJ89 424 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 DUX4L7P0CJ90 424 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 OR5H8P0DN80 308 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms