RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 GPR173Q9NS66 373 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 NKIRAS2Q9NYR9 191 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 ABCA12Q86UK0 2595 aa13.43□□□□□ -0.26
USP40-206ENST00000443711 TRBV5-7A0A0A0MS05 114 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 SC5DO75845 299 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 CD55P08174 381 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 GALP22466 123 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 CDKN1AP38936 164 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 RPL5P46777 297 aaKnown RBP13.42□□□□□ -0.26
USP40-206ENST00000443711 ALDH3B2P48448 385 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 TNFAIP6P98066 277 aaPredicted RBP13.42□□□□□ -0.26
USP40-206ENST00000443711 FABP5Q01469 135 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 FAM209AQ5JX71 171 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 PLCXD3Q63HM9 321 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 CD200R1LQ6Q8B3 271 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 ZCCHC24Q8N2G6 241 aaKnown RBP13.42□□□□□ -0.26
USP40-206ENST00000443711 OR5A2Q8NGI9 324 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 UBASH3BQ8TF42 649 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 OR5P3Q8WZ94 311 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 PHYHIPQ92561 330 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 DERL3Q96Q80 235 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 RTL8AQ9BWD3 113 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 EGLN1Q9GZT9 426 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 CXXC4Q9H2H0 198 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 TPK1Q9H3S4 243 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 PPP1R3EQ9H7J1 279 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 NEK6Q9HC98 313 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 C14orf119Q9NWQ9 140 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 UNC79Q9P2D8 2635 aa13.42□□□□□ -0.26
USP40-206ENST00000443711 TRDV1A0A1B0GX56 115 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 F5H5P2 479 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 GABRPO00591 440 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 TPD52L2O43399 206 aaKnown RBP13.41□□□□□ -0.26
USP40-206ENST00000443711 ALX3O95076 343 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 ATF1P18846 271 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 DNASE1P24855 282 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 TGFBR2P37173 567 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 SRP9P49458 86 aaKnown RBP13.41□□□□□ -0.26
USP40-206ENST00000443711 INSL4Q14641 139 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 CNN3Q15417 329 aaKnown RBP13.41□□□□□ -0.26
USP40-206ENST00000443711 UBE2V2Q15819 145 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 CEACAM21Q3KPI0 293 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 CEP78Q5JTW2 689 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 TMEM91Q6ZNR0 172 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 OR10AD1Q8NGE0 317 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 OR13F1Q8NGS4 319 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 NEU4Q8WWR8 484 aaPredicted RBP13.41□□□□□ -0.26
USP40-206ENST00000443711 DVL3Q92997 716 aaPredicted RBP13.41□□□□□ -0.26
USP40-206ENST00000443711 TMIGD2Q96BF3 282 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 ITPKCQ96DU7 683 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 YIPF6Q96EC8 236 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 TRMT61AQ96FX7 289 aaKnown RBP13.41□□□□□ -0.26
USP40-206ENST00000443711 RNF170Q96K19 258 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 NOX4Q9NPH5 578 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 DECR2Q9NUI1 292 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 CKLFQ9UBR5 152 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 IL19Q9UHD0 177 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 STUB1Q9UNE7 303 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 SSR3Q9UNL2 185 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 SLC7A11Q9UPY5 501 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 PLEKHA6Q9Y2H5 1048 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 USF3Q68DE3 2245 aa13.41□□□□□ -0.26
USP40-206ENST00000443711 CHD3Q12873 2000 aaKnown RBP13.4□□□□□ -0.26
USP40-206ENST00000443711 A0A1W2PPK0 400 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 OR5B21A6NL26 309 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 PIN1P1O15428 100 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 GPX5O75715 221 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 ARL6IP5O75915 188 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 UCHL1P09936 223 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 OCMP0CE72 109 aaPredicted RBP13.4□□□□□ -0.26
USP40-206ENST00000443711 RAB3AP20336 220 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 PRKACBP22694 351 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 CD200P41217 278 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 CRYBB2P43320 205 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 FUT6P51993 359 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 CCL8P80075 99 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 TIMM50Q3ZCQ8 353 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 GPR141Q7Z602 305 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 CELF2-AS1Q8N7Q2 184 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 OR1M1Q8NGA1 313 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 OR13C9Q8NGT0 318 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 LURAP1Q96LR2 239 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 SORCS2Q96PQ0 1159 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 EXOSC4Q9NPD3 245 aaKnown RBP13.4□□□□□ -0.26
USP40-206ENST00000443711 TAS2R4Q9NYW5 299 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 FOXJ3Q9UPW0 622 aa13.4□□□□□ -0.26
USP40-206ENST00000443711 APCP25054 2843 aa13.39□□□□□ -0.27
USP40-206ENST00000443711 ZNF732B4DXR9 585 aa13.39□□□□□ -0.27
USP40-206ENST00000443711 SULT1B1O43704 296 aa13.39□□□□□ -0.27
USP40-206ENST00000443711 IGFBP3P17936 291 aaPredicted RBP13.39□□□□□ -0.27
USP40-206ENST00000443711 TNFRSF1AP19438 455 aa13.39□□□□□ -0.27
USP40-206ENST00000443711 FSTP19883 344 aa13.39□□□□□ -0.27
USP40-206ENST00000443711 GADD45AP24522 165 aa13.39□□□□□ -0.27
USP40-206ENST00000443711 FGF9P31371 208 aaPredicted RBP13.39□□□□□ -0.27
USP40-206ENST00000443711 PPP3R1P63098 170 aa13.39□□□□□ -0.27
USP40-206ENST00000443711 GNG3P63215 75 aa13.39□□□□□ -0.27
USP40-206ENST00000443711 TESK1Q15569 626 aa13.39□□□□□ -0.27
USP40-206ENST00000443711 HSD17B12Q53GQ0 312 aa13.39□□□□□ -0.27
USP40-206ENST00000443711 ZNF529Q6P280 563 aa13.39□□□□□ -0.27
USP40-206ENST00000443711 DNAAF1Q8NEP3 725 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms