RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 TMEM17Q86X19 198 aa5.24□□□□□ -1.57
VPS50-205ENST00000441602 ZDHHC23Q8IYP9 409 aa5.24□□□□□ -1.57
VPS50-205ENST00000441602 GCNT2Q8N0V5 402 aa5.24□□□□□ -1.57
VPS50-205ENST00000441602 MBD3L2Q8NHZ7 208 aaPredicted RBP5.24□□□□□ -1.57
VPS50-205ENST00000441602 POM121L2Q96KW2 1035 aa5.24□□□□□ -1.57
VPS50-205ENST00000441602 SCGB3A2Q96PL1 93 aa5.24□□□□□ -1.57
VPS50-205ENST00000441602 MICU1Q9BPX6 476 aa5.24□□□□□ -1.57
VPS50-205ENST00000441602 USB1Q9BQ65 265 aaKnown RBP5.24□□□□□ -1.57
VPS50-205ENST00000441602 NEURL2Q9BR09 285 aa5.24□□□□□ -1.57
VPS50-205ENST00000441602 PAPOLGQ9BWT3 736 aaKnown RBP5.24□□□□□ -1.57
VPS50-205ENST00000441602 PTTG3PQ9NZH4 202 aa5.24□□□□□ -1.57
VPS50-205ENST00000441602 PRSS44E7EML9 344 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 TPD52L2O43399 206 aaKnown RBP5.23□□□□□ -1.57
VPS50-205ENST00000441602 SSX4O60224 188 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 GMDSO60547 372 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 PEX14O75381 377 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 RAD51DO75771 328 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 CST4P01036 141 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 MGMTP16455 207 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 SRP9P49458 86 aaKnown RBP5.23□□□□□ -1.57
VPS50-205ENST00000441602 RPS27AP62979 156 aaKnown RBP5.23□□□□□ -1.57
VPS50-205ENST00000441602 FAM3AP98173 230 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 MZT1Q08AG7 82 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 RBMS2Q15434 407 aaKnown RBP5.23□□□□□ -1.57
VPS50-205ENST00000441602 TBR1Q16650 682 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 OR10K2Q6IF99 312 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 SSX8Q7RTT4 187 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 LYPD6Q86Y78 171 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 MKXQ8IYA7 352 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 RBMXL3Q8N7X1 1067 aaKnown RBP5.23□□□□□ -1.57
VPS50-205ENST00000441602 C9orf106Q8NAJ2 232 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 PXT1Q8NFP0 134 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 FGFBP3Q8TAT2 258 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 FAM57AQ8TBR7 257 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 PRRT1Q99946 306 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 SELENOIQ9C0D9 397 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 TP63Q9H3D4 680 aaPredicted RBP5.23□□□□□ -1.57
VPS50-205ENST00000441602 NUDT15Q9NV35 164 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 NKIRAS2Q9NYR9 191 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 MRPL15Q9P015 296 aaKnown RBP5.23□□□□□ -1.57
VPS50-205ENST00000441602 SPEF1Q9Y4P9 236 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 ALG5Q9Y673 324 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 SZT2Q5T011 3432 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 OR5B21A6NL26 309 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 SERPINE3A8MV23 424 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 NAT2P11245 290 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 HIST1H1DP16402 221 aaKnown RBP5.23□□□□□ -1.57
VPS50-205ENST00000441602 SERPINA2P20848 420 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 CASP6P55212 293 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 ZNF92Q03936 586 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 MAB21L1Q13394 359 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 HIKESHIQ53FT3 197 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 TMEM42Q69YG0 159 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 SFRP4Q6FHJ7 346 aaPredicted RBP5.23□□□□□ -1.57
VPS50-205ENST00000441602 DNM1P46Q6ZS02 220 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 SAXO1Q8IYX7 474 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 CPEB3Q8NE35 698 aaKnown RBP5.23□□□□□ -1.57
VPS50-205ENST00000441602 OR56B2PQ8NGI1 322 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 SPACA5Q96QH8 159 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 TAAR6Q96RI8 345 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 SLC25A21Q9BQT8 299 aaPredicted RBP5.23□□□□□ -1.57
VPS50-205ENST00000441602 SFXN3Q9BWM7 321 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 PLSCR4Q9NRQ2 329 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 MYEF2Q9P2K5 600 aaKnown RBP5.23□□□□□ -1.57
VPS50-205ENST00000441602 NCKAP5O14513 1909 aa5.23□□□□□ -1.57
VPS50-205ENST00000441602 TRAV6A0A075B6T7 132 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 SSNA1O43805 119 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 IL18BPO95998 194 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 MELTFP08582 738 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 SPINK2P20155 84 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 IGHV1-2P23083 117 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 TIMP3P35625 211 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 IDH3GP51553 393 aaPredicted RBP5.22□□□□□ -1.57
VPS50-205ENST00000441602 PRDX4Q13162 271 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 UBE2V2Q15819 145 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 GABRA6Q16445 453 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 CARTPTQ16568 116 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 ZNF260Q3ZCT1 412 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 ZFP69Q49AA0 526 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 MTFR2Q6P444 385 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 C3P1Q6ZMU1 363 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 BHLHA15Q7RTS1 189 aaPredicted RBP5.22□□□□□ -1.57
VPS50-205ENST00000441602 CD163Q86VB7 1156 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 FJX1Q86VR8 437 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 DRAXINQ8NBI3 349 aaPredicted RBP5.22□□□□□ -1.57
VPS50-205ENST00000441602 AQP3Q92482 292 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 SEH1LQ96EE3 360 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 SOX7Q9BT81 388 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 RTL8AQ9BWD3 113 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 REPIN1Q9BWE0 567 aaKnown RBP5.22□□□□□ -1.57
VPS50-205ENST00000441602 LPAR5Q9H1C0 372 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 PIGMQ9H3S5 423 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 KCNK15Q9H427 330 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 B3GNT2Q9NY97 397 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 IL36GQ9NZH8 169 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 KLK11Q9UBX7 282 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 TUBD1Q9UJT1 453 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 CNOT1A5YKK6 2376 aaKnown RBP5.22□□□□□ -1.57
VPS50-205ENST00000441602 FAM186AA6NE01 2351 aa5.22□□□□□ -1.57
VPS50-205ENST00000441602 LOC100509620A0A075B734 347 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms