RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 ITPKCQ96DU7 683 aa15.67■□□□□ 0.1
SHH-204ENST00000441114 C1orf159Q96HA4 380 aa15.67■□□□□ 0.1
SHH-204ENST00000441114 METTL17Q9H7H0 456 aaPredicted RBP15.67■□□□□ 0.1
SHH-204ENST00000441114 ERVK13-1Q9NX77 482 aa15.67■□□□□ 0.1
SHH-204ENST00000441114 ENPP5Q9UJA9 477 aa15.67■□□□□ 0.1
SHH-204ENST00000441114 PPIAL4AQ9Y536 164 aa15.67■□□□□ 0.1
SHH-204ENST00000441114 TLN2Q9Y4G6 2542 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 A0A1B0GVI7 797 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 PTBP3O95758 552 aaKnown RBP15.66■□□□□ 0.1
SHH-204ENST00000441114 IGHA1P01876 353 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 MSMBP08118 114 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 HTR1AP08908 422 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 HOXB4P17483 251 aaPredicted RBP15.66■□□□□ 0.1
SHH-204ENST00000441114 THBS2P35442 1172 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 KIR3DL2P43630 455 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 RIPPLY3P57055 190 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 ACTA2P62736 377 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 ACTG2P63267 376 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 TMEM155Q4W5P6 130 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 PLCXD3Q63HM9 321 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 SFRP4Q6FHJ7 346 aaPredicted RBP15.66■□□□□ 0.1
SHH-204ENST00000441114 IL17RELQ6ZVW7 336 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 DOK3Q7L591 496 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 GLCCI1Q86VQ1 547 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 RDH10Q8IZV5 341 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 MUC20Q8N307 709 aaPredicted RBP15.66■□□□□ 0.1
SHH-204ENST00000441114 OR14K1Q8NGZ2 314 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 OR5P3Q8WZ94 311 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 ISG20L2Q9H9L3 353 aaKnown RBP15.66■□□□□ 0.1
SHH-204ENST00000441114 PATZ1Q9HBE1 687 aaKnown RBP15.66■□□□□ 0.1
SHH-204ENST00000441114 TMEM165Q9HC07 324 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 ABCB9Q9NP78 766 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 MRPS18AQ9NVS2 196 aaKnown RBP15.66■□□□□ 0.1
SHH-204ENST00000441114 V9GYS6 101 aa15.66■□□□□ 0.1
SHH-204ENST00000441114 HIVEP2P31629 2446 aa15.65■□□□□ 0.1
SHH-204ENST00000441114 SYT7O43581 403 aa15.65■□□□□ 0.1
SHH-204ENST00000441114 PLPP2O43688 288 aa15.65■□□□□ 0.1
SHH-204ENST00000441114 GPM6AP51674 278 aa15.65■□□□□ 0.1
SHH-204ENST00000441114 AQP4P55087 323 aa15.65■□□□□ 0.1
SHH-204ENST00000441114 ZNF154Q13106 437 aa15.65■□□□□ 0.1
SHH-204ENST00000441114 C11orf53Q8IXP5 236 aa15.65■□□□□ 0.1
SHH-204ENST00000441114 OR2G2Q8NGZ5 317 aa15.65■□□□□ 0.1
SHH-204ENST00000441114 OR51F2Q8NH61 342 aa15.65■□□□□ 0.1
SHH-204ENST00000441114 HPSE2Q8WWQ2 592 aa15.65■□□□□ 0.1
SHH-204ENST00000441114 RPL3LQ92901 407 aaKnown RBP15.65■□□□□ 0.1
SHH-204ENST00000441114 RNF166Q96A37 237 aaPredicted RBP15.65■□□□□ 0.1
SHH-204ENST00000441114 TMEM246Q9BRR3 403 aa15.65■□□□□ 0.1
SHH-204ENST00000441114 FGF23Q9GZV9 251 aaPredicted RBP15.65■□□□□ 0.1
SHH-204ENST00000441114 GPR173Q9NS66 373 aa15.65■□□□□ 0.1
SHH-204ENST00000441114 HIF1ANQ9NWT6 349 aa15.65■□□□□ 0.1
SHH-204ENST00000441114 FRRS1LQ9P0K9 344 aa15.65■□□□□ 0.1
SHH-204ENST00000441114 MTORP42345 2549 aa15.65■□□□□ 0.1
SHH-204ENST00000441114 CEACAM18A8MTB9 384 aa15.64■□□□□ 0.09
SHH-204ENST00000441114 ZNF732B4DXR9 585 aa15.64■□□□□ 0.09
SHH-204ENST00000441114 C3orf80F5H4A9 247 aa15.64■□□□□ 0.09
SHH-204ENST00000441114 CDIPTO14735 213 aa15.64■□□□□ 0.09
SHH-204ENST00000441114 CRLF1O75462 422 aa15.64■□□□□ 0.09
SHH-204ENST00000441114 NRASP01111 189 aa15.64■□□□□ 0.09
SHH-204ENST00000441114 DVL1P1P54792 670 aaPredicted RBP15.64■□□□□ 0.09
SHH-204ENST00000441114 NANOS3P60323 173 aaKnown RBP15.64■□□□□ 0.09
SHH-204ENST00000441114 GMFBP60983 142 aa15.64■□□□□ 0.09
SHH-204ENST00000441114 SEC61A1P61619 476 aaKnown RBP15.64■□□□□ 0.09
SHH-204ENST00000441114 LCN2P80188 198 aa15.64■□□□□ 0.09
SHH-204ENST00000441114 ZBTB37Q5TC79 503 aa15.64■□□□□ 0.09
SHH-204ENST00000441114 LRRC29Q8WV35 223 aa15.64■□□□□ 0.09
SHH-204ENST00000441114 TMEM186Q96B77 213 aa15.64■□□□□ 0.09
SHH-204ENST00000441114 PELI1Q96FA3 418 aa15.64■□□□□ 0.09
SHH-204ENST00000441114 MYCBPQ99417 103 aaPredicted RBP15.64■□□□□ 0.09
SHH-204ENST00000441114 SHARPINQ9H0F6 387 aa15.64■□□□□ 0.09
SHH-204ENST00000441114 PLEKHA1Q9HB21 404 aa15.64■□□□□ 0.09
SHH-204ENST00000441114 FGF20Q9NP95 211 aaPredicted RBP15.64■□□□□ 0.09
SHH-204ENST00000441114 INPP5EQ9NRR6 644 aa15.64■□□□□ 0.09
SHH-204ENST00000441114 HSPE1-MOB4S4R3N1 261 aa15.64■□□□□ 0.09
SHH-204ENST00000441114 ARHGAP32A7KAX9 2087 aa15.64■□□□□ 0.09
SHH-204ENST00000441114 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.63■□□□□ 0.09
SHH-204ENST00000441114 IGHV3OR15-7A0A075B7D8 119 aa15.63■□□□□ 0.09
SHH-204ENST00000441114 LOC107986453A0A1B0GWG9 222 aa15.63■□□□□ 0.09
SHH-204ENST00000441114 RPS2P15880 293 aaKnown RBP15.63■□□□□ 0.09
SHH-204ENST00000441114 EGR1P18146 543 aa15.63■□□□□ 0.09
SHH-204ENST00000441114 CR1LQ2VPA4 569 aa15.63■□□□□ 0.09
SHH-204ENST00000441114 CEACAM21Q3KPI0 293 aa15.63■□□□□ 0.09
SHH-204ENST00000441114 ZNF404Q494X3 552 aa15.63■□□□□ 0.09
SHH-204ENST00000441114 CLVS2Q5SYC1 327 aa15.63■□□□□ 0.09
SHH-204ENST00000441114 LYPD2Q6UXB3 125 aa15.63■□□□□ 0.09
SHH-204ENST00000441114 GCSAMQ8N6F7 178 aa15.63■□□□□ 0.09
SHH-204ENST00000441114 SCCPDHQ8NBX0 429 aa15.63■□□□□ 0.09
SHH-204ENST00000441114 TFAP2CQ92754 450 aa15.63■□□□□ 0.09
SHH-204ENST00000441114 ITFG2Q969R8 447 aa15.63■□□□□ 0.09
SHH-204ENST00000441114 ZNF649Q9BS31 505 aa15.63■□□□□ 0.09
SHH-204ENST00000441114 BEX2Q9BXY8 128 aa15.63■□□□□ 0.09
SHH-204ENST00000441114 FN1P02751 2386 aaKnown RBP15.63■□□□□ 0.09
SHH-204ENST00000441114 IRGMA1A4Y4 181 aa15.62■□□□□ 0.09
SHH-204ENST00000441114 TMEM210A6NLX4 147 aa15.62■□□□□ 0.09
SHH-204ENST00000441114 LGALS8O00214 317 aa15.62■□□□□ 0.09
SHH-204ENST00000441114 UBCP0CG48 685 aaKnown RBP15.62■□□□□ 0.09
SHH-204ENST00000441114 LIMS3P0CW19 117 aa15.62■□□□□ 0.09
SHH-204ENST00000441114 LIMS4P0CW20 117 aa15.62■□□□□ 0.09
SHH-204ENST00000441114 CCL1P22362 96 aa15.62■□□□□ 0.09
SHH-204ENST00000441114 ETV1P50549 477 aa15.62■□□□□ 0.09
SHH-204ENST00000441114 GNG3P63215 75 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms