RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 PSORS1C1Q9UIG5 152 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 MPLP40238 635 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 LSM11P83369 360 aaKnown RBP eCLIP6.19□□□□□ -1.42
SCN1A-204ENST00000423058 C19orf57Q0VDD7 668 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 ACOT7LQ6ZUV0 252 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 FAM122BQ7Z309 247 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 LAX1Q8IWV1 398 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 BATF2Q8N1L9 274 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF511Q8NB15 262 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 OR4S1Q8NGB4 309 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 OR4D9Q8NGE8 314 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 OR1F12Q8NHA8 337 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 FOXQ1Q9C009 403 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 COA4Q9NYJ1 87 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 SNX11Q9Y5W9 270 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 ARID1AO14497 2285 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 GFYI3L273 518 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 PLPP1O14494 284 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 TNFSF14O43557 240 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 THBS4P35443 961 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 CD200P41217 278 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 PPP2CAP67775 309 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 YBX1P67809 324 aaKnown RBP6.19□□□□□ -1.42
SCN1A-204ENST00000423058 SPEM2Q0P670 501 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 SLC17A1Q14916 467 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 KCNMB1Q16558 191 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 CD276Q5ZPR3 534 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 C8orf44Q96CB5 159 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 MS4A6EQ96DS6 147 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 SLC39A13Q96H72 371 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 CABLES2Q9BTV7 478 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 PAPPAQ13219 1627 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 NACAE9PAV3 2078 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 CXCL13O43927 109 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 SLC25A5P05141 298 aaKnown RBP6.19□□□□□ -1.42
SCN1A-204ENST00000423058 IAPPP10997 89 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 NPPBP16860 134 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 FPR2P25090 351 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 OPRM1P35372 400 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 SLC25A30Q5SVS4 291 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 NCR3LG1Q68D85 454 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 ALKAL1Q6UXT8 129 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 Q6ZN92 141 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 NECAP1Q8NC96 275 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 OR51S1Q8NGJ8 323 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 VSTM2AQ8TAG5 236 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 TM4SF19Q96DZ7 209 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 ADTRPQ96IZ2 230 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 MIEN1Q9BRT3 115 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 C1QTNF3Q9BXJ4 246 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 KIF26BQ2KJY2 2108 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 A0A1W2PNR3 127 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 AGFG2O95081 481 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 OR2B8PP59922 312 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 FABP9Q0Z7S8 132 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 PRDX4Q13162 271 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 CLEC2AQ6UVW9 174 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 SLC25A26Q70HW3 274 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 ADPRHL1Q8NDY3 354 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 GPR119Q8TDV5 335 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 BLNKQ8WV28 456 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 PERPQ96FX8 193 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 SORT1Q99523 831 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 SMIM7Q9BQ49 75 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 OR1A1Q9P1Q5 309 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 ANXA10Q9UJ72 324 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 UBE2L5PA0A1B0GUS4 154 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 ONECUT2O95948 504 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 ETV1P50549 477 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 TMUB2Q71RG4 321 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 SLC25A42Q86VD7 318 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 DEFB124Q8NES8 71 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 RNF2Q99496 336 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 KCNK15Q9H427 330 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 HINT3Q9NQE9 182 aaKnown RBP6.19□□□□□ -1.42
SCN1A-204ENST00000423058 PKD1L3Q7Z443 1732 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 DCTN6O00399 190 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 GATCO43716 136 aaKnown RBP6.19□□□□□ -1.42
SCN1A-204ENST00000423058 LANCL1O43813 399 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 NME2P1O60361 137 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 LRP3O75074 770 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 B4GALT1P15291 398 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 PPP1CCP36873 323 aaKnown RBP6.19□□□□□ -1.42
SCN1A-204ENST00000423058 FUT7Q11130 342 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 CORO6Q6QEF8 472 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 SLC16A11Q8NCK7 471 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF384Q8TF68 577 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 SLC35B4Q969S0 331 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 ADGRG7Q96K78 797 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 HSD3B7Q9H2F3 369 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 SLC7A10Q9NS82 523 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 HIST1H1CP16403 213 aaKnown RBP6.19□□□□□ -1.42
SCN1A-204ENST00000423058 GNG10P50151 68 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 PJVKQ0ZLH3 352 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 VAMP3Q15836 100 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 ACKR1Q16570 336 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 COX20Q5RI15 118 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF534Q76KX8 674 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 TMEM171Q8WVE6 324 aa6.19□□□□□ -1.42
SCN1A-204ENST00000423058 GABRG3Q99928 467 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms