RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 ZNF529Q6P280 563 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 VHLLQ6RSH7 139 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 C22orf34Q6ZV56 151 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 CDH26Q8IXH8 852 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 OR5AS1Q8N127 324 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 OR52N4Q8NGI2 321 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 OR6Q1Q8NGQ2 317 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 LINC01560Q8TB33 94 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 S100ZQ8WXG8 99 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 GFI1Q99684 422 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 UQCC2Q9BRT2 126 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 LIN7BQ9HAP6 207 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 RHBDD3Q9Y3P4 386 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 ATP23Q9Y6H3 246 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 FAM230AA0A1W2PPH8 454 aa14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 VSTM5A8MXK1 200 aa14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 FAM25AB3EWG3 89 aa14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 FAM25CB3EWG5 89 aa14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 FAM25GB3EWG6 89 aa14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 CST4P01036 141 aa14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 CALCBP10092 127 aa14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 GRNP28799 593 aaKnown RBP14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 GLRXP35754 106 aa14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 FABP6P51161 128 aa14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 CDSNQ15517 529 aa14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 UBE2V2Q15819 145 aa14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 LHFPL2Q6ZUX7 228 aa14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 HAVCR1Q96D42 359 aa14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 MARS2Q96GW9 593 aaKnown RBP14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 S100A13Q99584 98 aa14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 HMG20AQ9NP66 347 aa14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 MRPL15Q9P015 296 aaKnown RBP14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 GPR160Q9UJ42 338 aa14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 MPC1Q9Y5U8 109 aa14.71□□□□□ -0.05
CCDC28B-202ENST00000421922 HCFC1P51610 2035 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 IQCF6A8MYZ5 107 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 CD3EP07766 207 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 PRF1P14222 555 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 SNRPBP14678 240 aaKnown RBP14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 RBP2P50120 134 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 FUT6P51993 359 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 ATP1B3P54709 279 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 MTCP1P56278 107 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 CLDN12P56749 244 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 SNTB1Q13884 538 aaKnown RBP14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 P2RY14Q15391 338 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 SPANXN2Q5MJ10 180 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 MBNL2Q5VZF2 373 aaKnown RBP14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 TMEM42Q69YG0 159 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 AWAT2Q6E213 333 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 SAMD12Q8N8I0 201 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 OR8S1Q8NH09 359 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 SYNPRQ8TBG9 265 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 LGALS14Q8TCE9 139 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 UBASH3BQ8TF42 649 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 SPACA5Q96QH8 159 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 PURGQ9UJV8 347 aaKnown RBP14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 FZR1Q9UM11 496 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 NOP16Q9Y3C1 178 aaKnown RBP14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 ETV7Q9Y603 341 aa14.7□□□□□ -0.06
CCDC28B-202ENST00000421922 IGKV1-9A0A0C4DH69 117 aa14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 DPRXA6NFQ7 191 aa14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 CTDSP2O14595 271 aa14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 THBS2P35442 1172 aa14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 TALDO1P37837 337 aa14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 MPV17P39210 176 aa14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 SCAND1P57086 179 aa14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 KLF3P57682 345 aaPredicted RBP14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 PSG7Q13046 419 aa14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 KISS1Q15726 138 aa14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 MOGQ16653 247 aa14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 BEX5Q5H9J7 111 aa14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 LURAP1LQ8IV03 231 aa14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 LAX1Q8IWV1 398 aa14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 NUP37Q8NFH4 326 aa14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 PLPPR2Q96GM1 343 aa14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 MICU1Q9BPX6 476 aa14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 NKIRAS2Q9NYR9 191 aa14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 DUSP13Q9UII6 198 aa14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 MRPS28Q9Y2Q9 187 aaKnown RBP14.69□□□□□ -0.06
CCDC28B-202ENST00000421922 A0A0B4J203 849 aa14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 HPGDSO60760 199 aa14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 PAHP00439 452 aa14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 ARSBP15848 533 aa14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 KITLGP21583 273 aa14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 CFPP27918 469 aa14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 TFF3Q07654 80 aa14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 SRSF1Q07955 248 aaKnown RBP eCLIP14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 RIN1Q13671 783 aa14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 DMRTC1Q5HYR2 192 aa14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 UBE2NLQ5JXB2 153 aa14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 C1orf100Q5SVJ3 147 aa14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 NCMAPQ5T1S8 102 aa14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 ADAM5Q6NVV9 412 aa14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 RFT1Q96AA3 541 aa14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 FAM3DQ96BQ1 224 aa14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 DIRAS2Q96HU8 199 aa14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 ADAT1Q9BUB4 502 aaKnown RBP14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 WDR12Q9GZL7 423 aaKnown RBP14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms