RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 TOXO94900 526 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 IGLV3-1P01715 115 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 OPN1LWP04000 364 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 OR4E1P0C645 316 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 CDAP32320 146 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 PRKXP51817 358 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 SEC61A1P61619 476 aaKnown RBP12.98□□□□□ -0.33
USP4-203ENST00000415188 HIST1H3AP68431 136 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 SRSF4Q08170 494 aaKnown RBP12.98□□□□□ -0.33
USP4-203ENST00000415188 MFAP5Q13361 173 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 CDNFQ49AH0 187 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 ACTBL2Q562R1 376 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 HIST2H3PS2Q5TEC6 136 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 RAET1LQ5VY80 246 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 OR10K2Q6IF99 312 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 FAHD2BQ6P2I3 314 aaPredicted RBP12.98□□□□□ -0.33
USP4-203ENST00000415188 Q6ZSR3 168 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 HIST2H3AQ71DI3 136 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 TRAPPC6BQ86SZ2 158 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 OR5AS1Q8N127 324 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 C12orf45Q8N5I9 185 aaPredicted RBP12.98□□□□□ -0.33
USP4-203ENST00000415188 OR9K2Q8NGE7 335 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 OR10R2Q8NGX6 335 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 PSMF1Q92530 271 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 C10orf35Q96D05 121 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 FAHD2AQ96GK7 314 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 TINAGL1Q9GZM7 467 aaPredicted RBP12.98□□□□□ -0.33
USP4-203ENST00000415188 GPR84Q9NQS5 396 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 PLA2G3Q9NZ20 509 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 GHRLQ9UBU3 117 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 ANAPC10Q9UM13 185 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 MRPS28Q9Y2Q9 187 aaKnown RBP12.98□□□□□ -0.33
USP4-203ENST00000415188 FLVCR1Q9Y5Y0 555 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 A0A0U1RQV5 110 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 RER1O15258 196 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 ZNF35P13682 527 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 PRF1P14222 555 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 SSTR2P30874 369 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 SRD5A2P31213 254 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 THBS4P35443 961 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 ZNF84P51523 738 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 PNLIPRP3Q17RR3 467 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 C4orf17Q53FE4 359 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 ATPAF1Q5TC12 328 aaPredicted RBP12.97□□□□□ -0.33
USP4-203ENST00000415188 B3GNTL1Q67FW5 361 aaPredicted RBP12.97□□□□□ -0.33
USP4-203ENST00000415188 COMMD2Q86X83 199 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 ANGPTL5Q86XS5 388 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 TMEM123Q8N131 208 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 CHST4Q8NCG5 386 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 NKX3-1Q99801 234 aaPredicted RBP12.97□□□□□ -0.33
USP4-203ENST00000415188 IFT46Q9NQC8 304 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 KIF25Q9UIL4 384 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 RPS10-NUDT3A0A1W2PQS6 291 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 OR14I1A6ND48 311 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 M0QYG6 137 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 DHHO43323 396 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 F10P00742 488 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 SERPINA7P05543 415 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 ZNF24P17028 368 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 CXCL2P19875 107 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 CBX5P45973 191 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 H2BFSP57053 126 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 FGL1Q08830 312 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 ECH1Q13011 328 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 ENDOGQ14249 297 aaKnown RBP12.97□□□□□ -0.33
USP4-203ENST00000415188 GK2Q14410 553 aaPredicted RBP12.97□□□□□ -0.33
USP4-203ENST00000415188 SGCAQ16586 387 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 C3P1Q6ZMU1 363 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 FAM57BQ71RH2 274 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 PNLDC1Q8NA58 520 aaKnown RBP12.97□□□□□ -0.33
USP4-203ENST00000415188 OR14K1Q8NGZ2 314 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 PGAM5Q96HS1 289 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 CITED4Q96RK1 184 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 SLC6A7Q99884 636 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 ZNF416Q9BWM5 594 aa12.97□□□□□ -0.33
USP4-203ENST00000415188 RPA2P15927 270 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 PPP3CBP16298 524 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 NAT1P18440 290 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 AGTR1P30556 359 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 S100A11P31949 105 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 ALDH3B1P43353 468 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 P2RX3P56373 397 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 ARG2P78540 354 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 C11orf88Q6PI97 169 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 GLIPR1L1Q6UWM5 242 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 SLC25A42Q86VD7 318 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 C20orf196Q8IYI0 205 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 ZNF101Q8IZC7 436 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 BEST3Q8N1M1 668 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 ST6GALNAC3Q8NDV1 305 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 OR56B1Q8NGI3 324 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 OR13C8Q8NGS7 320 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 PP6455Q8WZ26 134 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 NABP1Q96AH0 204 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 GAL3ST1Q99999 423 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 SLX1AQ9BQ83 275 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 URM1Q9BTM9 101 aaKnown RBP12.96□□□□□ -0.34
USP4-203ENST00000415188 GSX2Q9BZM3 304 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 LPAR5Q9H1C0 372 aa12.96□□□□□ -0.34
USP4-203ENST00000415188 FOXD3Q9UJU5 478 aaPredicted RBP12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms