RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 KLHDC7BQ96G42 594 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 YPEL4Q96NS1 127 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 SMOC1Q9H4F8 434 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 PTGES2Q9H7Z7 377 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 SLC2A4RGQ9NR83 387 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 SERINC1Q9NRX5 453 aa5.06□□□□□ -1.6
CCDC88A-203ENST00000412148 IGKV1D-43A0A0B4J1Z2 117 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 IGHV5-51A0A0C4DH38 117 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 BTBD17A6NE02 478 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF726A6NNF4 738 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 E5RGE8 158 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 SOX1O00570 391 aaPredicted RBP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 EIF3GO75821 320 aaKnown RBP eCLIP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 IGHG1P01857 330 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 ACAA1P09110 424 aaPredicted RBP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 HLA-DOBP13765 273 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 CPT2P23786 658 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 TLE3Q04726 772 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 RBM39Q14498 530 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 IL13RA2Q14627 380 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 ATXN7L3Q14CW9 347 aaPredicted RBP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 SRSF7Q16629 238 aaKnown RBP eCLIP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 FAM76BQ5HYJ3 339 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 C10orf128Q5T292 105 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 FBXO46Q6PJ61 603 aaPredicted RBP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 PNLDC1Q8NA58 520 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 NTNG2Q96CW9 530 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 CPNE2Q96FN4 548 aaPredicted RBP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 GAS2L1Q99501 681 aaPredicted RBP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 PRRX2Q99811 253 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 SULT4A1Q9BR01 284 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 RPP25Q9BUL9 199 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 SUCNR1Q9BXA5 334 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 ANGPTL4Q9BY76 406 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 OR51M1Q9H341 326 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 C14orf166Q9Y224 244 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 NOSIPQ9Y314 301 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 NSG2Q9Y328 171 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 PTRH2Q9Y3E5 179 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 TDRD6O60522 2096 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 LOC101059948A0A1B0GTJ6 334 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 C13orf42A0A1B0GVH6 325 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 VSTM2BA6NLU5 285 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 H7C1Q1 480 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 SOCS1O15524 211 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 TRAF3IP2O43734 574 aaPredicted RBP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 LRP3O75074 770 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 NDUFS6O75380 124 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 MED6O75586 246 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 RAD51DO75771 328 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 CA3P07451 260 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 CELA3AP09093 270 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 AMY2BP19961 511 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 FBLP22087 321 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 S100PP25815 95 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 RPL12P30050 165 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 PTGFRP43088 359 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 GLP1RP43220 463 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 P2RY1P47900 373 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 EFNA3P52797 238 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 LINC01559Q495D7 138 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 SFTPA2Q8IWL1 248 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 TMEM104Q8NE00 496 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 NFAM1Q8NET5 270 aaPredicted RBP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 OR9K2Q8NGE7 335 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 OR8B12Q8NGG6 310 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 OR1J1Q8NGS3 322 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 TSLPQ969D9 159 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 MRPL38Q96DV4 380 aaKnown RBP5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 ARL5BQ96KC2 179 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 MESP1Q9BRJ9 268 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 NICN1Q9BSH3 213 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 PECRQ9BY49 303 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF304Q9HCX3 659 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 BRCA2P51587 3418 aa5.05□□□□□ -1.6
CCDC88A-203ENST00000412148 A0A087WWC5 75 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 A0A1W2PR77 199 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 TCRBV21S2A2A0A5A6 115 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 K7EPK0 472 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 SIGLEC5O15389 551 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 TOX3O15405 576 aaPredicted RBP5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 GATCO43716 136 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 WISP1O95388 367 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 CSN2P05814 226 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 SLC2A1P11166 492 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF44P15621 663 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 ZNF43P17038 809 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 BCKDHBP21953 392 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 PTGER4P35408 488 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 RBMXP38159 391 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 RPL35P42766 123 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 OR3A2P47893 321 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 SNU13P55769 128 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 CD81P60033 236 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 RNF4P78317 190 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 GABREP78334 506 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 POU3F1Q03052 451 aaPredicted RBP5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 FMODQ06828 376 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 SIGLEC14Q08ET2 396 aa5.04□□□□□ -1.6
CCDC88A-203ENST00000412148 SMCO1Q147U7 214 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms