RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 KCNE4Q8WWG9 221 aa11.69□□□□□ -0.54
COL6A3-206ENST00000409809 KLK6Q92876 244 aa11.69□□□□□ -0.54
COL6A3-206ENST00000409809 TRAV34A0A0B4J273 112 aa11.69□□□□□ -0.54
COL6A3-206ENST00000409809 P2RY10O00398 339 aa11.69□□□□□ -0.54
COL6A3-206ENST00000409809 WNT11O96014 354 aa11.69□□□□□ -0.54
COL6A3-206ENST00000409809 RPS23P62266 143 aaKnown RBP11.69□□□□□ -0.54
COL6A3-206ENST00000409809 TBC1D28Q2M2D7 210 aa11.69□□□□□ -0.54
COL6A3-206ENST00000409809 RNF165Q6ZSG1 346 aa11.69□□□□□ -0.54
COL6A3-206ENST00000409809 MARCH1Q8TCQ1 289 aa11.69□□□□□ -0.54
COL6A3-206ENST00000409809 IL22RA2Q969J5 263 aa11.69□□□□□ -0.54
COL6A3-206ENST00000409809 PARM1Q6UWI2 310 aa11.69□□□□□ -0.54
COL6A3-206ENST00000409809 Q6ZSR9 355 aa11.69□□□□□ -0.54
COL6A3-206ENST00000409809 RABEPKQ7Z6M1 372 aa11.69□□□□□ -0.54
COL6A3-206ENST00000409809 MS4A8Q9BY19 250 aa11.69□□□□□ -0.54
COL6A3-206ENST00000409809 S1PR5Q9H228 398 aa11.69□□□□□ -0.54
COL6A3-206ENST00000409809 SIRPB1O00241 398 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 ACTL6AO96019 429 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 F13BP05160 661 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 CRYBB2P43320 205 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 MFSD12Q6NUT3 480 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 SLC48A1Q6P1K1 146 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 MRPS24Q96EL2 167 aaKnown RBP11.68□□□□□ -0.54
COL6A3-206ENST00000409809 USP3Q9Y6I4 520 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 FREM3P0C091 2139 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 MARCH5Q9NX47 278 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 OR2T8A6NH00 312 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 ZNF542PQ5EBM4 170 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 PWWP2BQ6NUJ5 590 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 MENTQ9BUN1 341 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 C9orf170A2RU37 121 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 SUCLG1P53597 346 aaKnown RBP11.68□□□□□ -0.54
COL6A3-206ENST00000409809 PLPPR5Q32ZL2 321 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 TMED7Q9Y3B3 224 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 RPS4Y1P22090 263 aaKnown RBP11.68□□□□□ -0.54
COL6A3-206ENST00000409809 DEFB132Q7Z7B7 95 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 OR5C1Q8NGR4 320 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 PRR14Q9BWN1 585 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 HDAC8Q9BY41 377 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 ZMAT3Q9HA38 289 aaKnown RBP11.68□□□□□ -0.54
COL6A3-206ENST00000409809 SPATA6Q9NWH7 488 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-206ENST00000409809 M0QZQ0 153 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 ZNF749O43361 778 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 HLA-DQA1P01909 254 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 C18orf21Q32NC0 220 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-206ENST00000409809 PKDCCQ504Y2 493 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 SLCO4C1Q6ZQN7 724 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 MUC20Q8N307 709 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-206ENST00000409809 OR1L4Q8NGR5 311 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 RCL1Q9Y2P8 373 aaKnown RBP11.68□□□□□ -0.54
COL6A3-206ENST00000409809 TNRC6CQ9HCJ0 1690 aaKnown RBP11.68□□□□□ -0.54
COL6A3-206ENST00000409809 DSCR3O14972 297 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 CEBPBP17676 345 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 FOLR3P41439 243 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 SLC25A1P53007 311 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 ST8SIA1Q92185 356 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 SH2D2AQ9NP31 389 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 PAM16Q9Y3D7 125 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 TIMM9Q9Y5J7 89 aa11.68□□□□□ -0.54
COL6A3-206ENST00000409809 GEMIN2O14893 280 aaKnown RBP11.67□□□□□ -0.54
COL6A3-206ENST00000409809 CDX1P47902 265 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-206ENST00000409809 H1FOOQ8IZA3 346 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-206ENST00000409809 LCORQ96JN0 433 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-206ENST00000409809 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-206ENST00000409809 OCIAD1Q9NX40 245 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 CEP290O15078 2479 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 OPN1LWP04000 364 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 DHRS7BQ6IAN0 325 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-206ENST00000409809 SPSB1Q96BD6 273 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 MUCL1Q96DR8 90 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 BOD1Q96IK1 185 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 KIAA1456Q9P272 454 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 APOBEC3BQ9UH17 382 aaKnown RBP11.67□□□□□ -0.54
COL6A3-206ENST00000409809 ZNF217O75362 1048 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 FGF2P09038 288 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 PPIAP62937 165 aaKnown RBP11.67□□□□□ -0.54
COL6A3-206ENST00000409809 FAM3AP98173 230 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 PIANPQ8IYJ0 282 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 SLC25A33Q9BSK2 321 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 SLC17A4Q9Y2C5 497 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 MRPS16Q9Y3D3 137 aaKnown RBP11.67□□□□□ -0.54
COL6A3-206ENST00000409809 SMIM21Q3B7S5 101 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 C1orf140Q5VVS0 124 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 FGF14Q92915 247 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 CRYBG1Q9Y4K1 1723 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 G3V3Y1 287 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 JMJD7P0C870 316 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 FAM71E1Q6IPT2 247 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 OR1L1Q8NH94 360 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 FAM216AQ8WUB2 273 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 DEFB118Q96PH6 123 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 TMEM147Q9BVK8 224 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 SMG9Q9H0W8 520 aaKnown RBP11.67□□□□□ -0.54
COL6A3-206ENST00000409809 HIST1H1EP10412 219 aaKnown RBP11.67□□□□□ -0.54
COL6A3-206ENST00000409809 OR2C3Q8N628 320 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 PERPQ96FX8 193 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 EGLN1Q9GZT9 426 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 ALX4Q9H161 411 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-206ENST00000409809 KCND3Q9UK17 655 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 A0A087WV62 115 aa11.67□□□□□ -0.54
COL6A3-206ENST00000409809 SFT2D2O95562 160 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms